YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|150841239, gi...
Protein type:	Transmembrane
Type Confidence:	0.63
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQQYVPNKF LQRLRAGEKL IGCWSALGSP ITMEVLGLAG FDWILFDGEH APNDVLSFIP  60
   61 QLMAVKDSSS MPIVRVPTNE PVIIKRVLDI GFYNILVPYV ETEEQAMNAV SATRYPPEGI 120
  121 RGVSVSHRNN GYATIPDYFK VINDNIGVIV QIENQKGVDN VDKIAAVEGV DCIFVGPGDL 180
  181 SAALGYLGQP NHPEVQKVIQ HIFATAKKYG KPCGILAPVE ADARRYLEWG ATFVAVGSDL 240
  241 GIFRAATQAL SDKYKD

Type	Start	End	Confidence
Cytoplasmic	1	19	0.62
Transmembrane Helix	20	41	0.59
Non-Cytoplasmic	42	256	0.95