YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74277507, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKQKKLTEI TQDTKILRHK FPARVSHWFL VIAFFLTMFT GVAFFFPDFA WLHEILGTPQ  60
   61 LARAIHPFTG IIMFIAFIFM AFVYAHHNIP EKNDIRWAKG IVEVLKGNEH NVAYNGKYNL 120
  121 GQKMLFWTLI LAMVTLLVTG LIMWRKYFSG YFSVTTLRIA ILLHAASAFA LFTGILVHIY 180
  181 MAFWVKGSIR AMIEGWVTVR WAKKHHPKWY REEVLPELEK EVKKNTRD

Type	Start	End	Confidence
Cytoplasmic	1	24	0.97
Transmembrane Helix	25	46	0.93
Non-Cytoplasmic	47	63	0.90
Transmembrane Helix	64	86	0.91
Cytoplasmic	87	124	0.95
Transmembrane Helix	125	144	0.96
Non-Cytoplasmic	145	159	0.88
Transmembrane Helix	160	182	0.92
Cytoplasmic	183	228	0.97