YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|150841044, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	376	0.99
Transmembrane Helix	377	398	0.85
Cytoplasmic	399	410	0.83
Transmembrane Helix	411	431	0.89
Non-Cytoplasmic	432	439	0.95
Transmembrane Helix	440	461	0.91
Cytoplasmic	462	476	0.92
Transmembrane Helix	477	498	0.91
Non-Cytoplasmic	499	518	0.94
Transmembrane Helix	519	542	0.91
Cytoplasmic	543	552	0.83
Transmembrane Helix	553	573	0.90
Non-Cytoplasmic	574	604	0.90
Transmembrane Helix	605	623	0.95
Cytoplasmic	624	641	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYLQFIFIL FCSLFSHPLL AADYQALADD IKARLDKTAQ LYQQHQTAEA KTEVQSAYFE  60
   61 VFENLEGPIR INFSAQKSYQ MEAAFGEIRK MITENKPQAE IQARIDWLKS ELDAVLPSLA 120
  121 EGHQLNAEGQ HAAYDNQDIL PYWQQSFRII DDLLAQAIEA YQENKFADAK KFMQQAQYDG 180
  181 FKNSEMEMSI RHNRGASISA NINQQFYDLI RLTEQPDQIN ALGYQSTQLL QTIEEQLPDL 240
  241 PATRDSQIQQ AEQRTVEDQQ DSQDWSKVTA EINNRIQQAI QTYRDGESKK AILSVQDTYF 300
  301 DVFEATGMEN KIGSRDSNFK TRLEAYFTRM VSLMKANEPV KKLQTQADSL SQDLAQAVTT 360
  361 LQGENQSDWA MFLYSLLIIT REGLEALLIV AAIVAYLVKN KHEDKLPTIR NSVYVALAAS 420
  421 VVTAYLFQMI FENSGQNREL LEGFTMIIAV FMLFSMSYWL LSKVEAQNWK RYLEGKLSTA 480
  481 LTTGSLIGLW LTSFLAVYRE GAETVLFYYA LAGDAQSAVS YFYLFAGFAV GVVILAICYF 540
  541 IMRYSVVKLP LKPFFMFTGG FMYLMAFVFA GKSVLELIEG KLFEPTLVNH VPEIGWLGIY 600
  601 PYVETLIPQG LLILAAVFAL FYMKIQARKD IENKDIENEV Q