YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75510815
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQGGQIASM RIRMFSQIAN IMLYCLFIFF WILVGLVLWV KISWQTFVNG CIYWWCTTLE  60
   61 GMRDLIKSQP VYEIQYYGKT FRMNAAQVLH DKYMIWCGEQ LWSAFVLATV VALVICLITF 120
  121 FVVSWILGRQ GKQQSENEVT GGRQLTDNPK DVARMLKKDG RDSDIRIGDL PIIRDSEIQN 180
  181 FCLHGTVGAG KSEVIRRLAN YARQRGDMVV IYDRSGEFVK SYYDPSIDKI LNPLDARCAA 240
  241 WDLWKECLTQ PDFDNTANTL IPMGTKEDPF WQGSGRTIFA EAAYLMRNDP NRSYSKLVDT 300
  301 LLSIKIEKLR TYLRNSPAAN LVEEKIEKTA ISIRAVLTN

Type	Start	End	Confidence
Cytoplasmic	1	20	0.89
Transmembrane Helix	21	40	0.96
Non-Cytoplasmic	41	103	0.89
Transmembrane Helix	104	127	0.91
Cytoplasmic	128	339	0.92