YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86130824, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSLTQIVLG AAVGEAVLGK KVGNRAMLWG AIAGTIPDLD VVWRYLTDTI TATEMHRGFS  60
   61 HSIIFALIAA PFFGWLVHQI KKRPDVGWMG WSKLFFWGLF THPLLDAFTT WGTQIFWPFH 120
  121 WRVAFNSIFV VDPLYTLPFL ICVIAAATRD RDTLSRKRTN NLGIYLSTAY LLLTVLIKFA 180
  181 VHHKVEASLQ EQGITYTKIS TRPAPFNTVL WNINVDTQDA YLIGDYSFFD SQPIVYKAFP 240
  241 KKRAQAQKWI ETDEVQRLIT ISEGWYILEK EEESWVYNDL RFGLISNDDN DSQFVFRYLL 300
  301 TENDGAITAT EDRPTPENGK KLLIDLWQRI KGN

Type	Start	End	Confidence
Cytoplasmic	1	25	0.76
Transmembrane Helix	26	43	0.73
Non-Cytoplasmic	44	57	0.83
Transmembrane Helix	58	78	0.92
Cytoplasmic	79	93	0.79
Transmembrane Helix	94	113	0.86
Non-Cytoplasmic	114	127	0.72
Transmembrane Helix	128	148	0.89
Cytoplasmic	149	161	0.90
Transmembrane Helix	162	182	0.88
Non-Cytoplasmic	183	333	0.92