YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|253978035, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDESDDKTE APTPHRLEKA REEGQIPRSR ELTSLLILLV GVSVIWFGGV SLARRLSGML  60
   61 SAGLHFDHSI IKDPNLILGQ IILLIREAML ALLPLISGVV LVALISPVML GGLVFSGKSL 120
  121 QPKFSKLNPL PGIKRMFSAQ TGAELLKAIL KTILVGSVTG FFLWHHWPQM MRLMAESPIT 180
  181 AMGNAMDLVG LCALLVVLGV IPMVGFDVFF QIFSHLKKLR MSRQDIRDEF KQSEGDPHVK 240
  241 GRIRQMQRAA ARRRMMADVP KADVIVNNPT HYSVALQYDE NKMSAPKVVA KGAGLVALRI 300
  301 REIGAENNVP TLEAPPLARA LYRHAEIGQQ IPGQLYAAVA EVLAWVWQLK RWRLAGGQRP 360
  361 VQPTHLPVPE ALDFINEKPT HE

Type	Start	End	Confidence
Cytoplasmic	1	33	0.91
Transmembrane Helix	34	53	0.94
Non-Cytoplasmic	54	90	0.86
Transmembrane Helix	91	115	0.88
Cytoplasmic	116	144	0.89
Transmembrane Helix	145	167	0.87
Non-Cytoplasmic	168	187	0.88
Transmembrane Helix	188	213	0.88
Cytoplasmic	214	382	0.92