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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|119353802, gi...
Protein type: Transmembrane
Type Confidence: 0.82
Topology Confidence: 0.33
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKNYTISLL TAGFLFVGYL LVWLSVYRAD HQLREQLLKD VYAVARNMDK EQIKALSGTS  60
   61 ADRLNPHYID LKAKLSSGCK SRTKCRFLYL LGRKSDKTIF FLVDSELTGS SEISPPGQVY 120
  121 DEASSVLQRV FRTGHADSEG PLPDRWGVWV TGFVPLVDQQ SEKVVAVLGM DVDAADWTLD 180
  181 IAARSALPIG VVIIIIIVIV TILQSTRHRE ITSSPFLRRL LPVLLAVLFF LFFGFGVLLW 240
  241 WLQERRIEEV VHQTEKEVFT VFQNALMVQS EGLEIALNMI CTDNTVADEL KSRNSEILYS 300
  301 KYEPLFRHLQ DKHGVSFFCF MDSSRKCLLR LHKPEKSGDR ISRFTLLEAQ KTGLFSNGLE 360
  361 LDPKGLLTLR VVMPVFQKGR IVGFIDVAKE IEAVINRVHY QPGLGIALIV DKKFLHRGDW 420
  421 EKAMHALGRK TEWDRFRDEV QIYNTFGYFP EAFDFSLASS DSVAFYRSRA VTWQGKSWRL 480
  481 NFLPLEDASG RTIGRMLVIQ DVSFYQAGIF RMITLAGIAL LVILSLLFGF LFVVLKRIDR 540
  541 GVINREQELI DSREQYRLAV NGSNDGIWDW DMRSDTLYLS PKWKKTLGYE DDDLSNIYKT 600
  601 FEDLVHPEDK PVFRTYLDRY LNGEIPLFNI EFRIRHKDGA YVWILGRGEV LRDKSGSPYR 660
  661 MAGSMSDITG RKKDEDELKR RSAFQLVVMD LAIGFVNTPL DELDRSIERA LALVGEFLQV 720
  721 DRSYLFRYDF ANGTMSNTHE WCSEGIAPEK NNLQNLLNSI IPDWVATHLA GRIVHISSVD 780
  781 ALDDESALKM ILASQGIKTL ISLPLIYHEH CFGFVGFDAV REVKKWGDDE ISLLRVLAEL 840
  841 FTNAELRFRH ETALVDARYA AESANRAKSE FLANMSHEIR TPMNGVIGMA NLLLDTDLSD 900
  901 EQRDFADMLL ASGESLLTVI NDILDFSKIE AGKLELEHIV FDLRKLLESF GAVMGLKAVE 960
  961 KNLEFNCVVS PEVPVFFKGD PGRIRQILNN LAGNAIKFTQ NGNVTVAVSM QSENNGDAVL1020
 1021 RFSVKDTGIG IPEAKLDRLF KSFTQVDAST TRKYGGTGLG LAISRQLVEL MGGKIGVISH1080
 1081 EGNGSEFWFT IFLKKQPFYS TIETQPTSAF AGIRALVVDD NAANRKMLKA LLSSLDIRVT1140
 1141 EASGGDAALG ELRSAFKSGD PFALAIIDMQ MPDMDGFMLG QTIKEDLLLR NTELFLMSPV1200
 1201 GTLNQREEYH RAGFSANLSK PVGQLELVAA INKVVFNHDN QSGSRNPSIS YPVTEEGEPP1260
 1261 MVPVGKLEHY RILLAEDSRV NQMVVIGVLT KFGYGVDVVS NGQECVDVLQ KRTYDLVLMD1320
 1321 VQMPVMDGLN ATGIIRDPAS KVLDHNIPVI ALTAHAMQGD RESCLYAGMN DYISKPIDAS1380
 1381 VLTETISKWL PVKPDSPA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle