YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119353318, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYGFVIDAR KCIGCHACTV ACKSENQVPL GVNRTWVKYV EKGSFPETRR YFTVLRCNHC  60
   61 AEPPCVAICP VEALQKREDG IVDFDGRRCI GCKACAQACP YNALYIDPET HTSAKCNYCA 120
  121 HRKEVGLQPA CVAICPQQAI VSGDLDDPSS KIAALVAGEQ TVVRKPEKGT SPKLFYINGD 180
  181 GASLDPLQVS LEKEYHWSAQ ARGVGHFADK QKGAPAIEKP HHEAPATGPA MRRVYDIPSK 240
  241 GAVWGWEVPA YVSAKAVSSG VFLLFFALTA LLGQELSGMM QWAAWATSLV FLGLTGGFLI 300
  301 KDLDRPDRFS SVMLRPQFGS WLVKGGLTIT GYGAFLALWG ASRFLQIPAL ERVALWGGAL 360
  361 FALITAIYTA FLFGSAKGRD FWQSPMLLLH MLLNALLAGG STMLLLGFGT GASVELFALL 420
  421 KQLLAAGFSL HLVIMLLELY GKHPSLQAER TAEIIRSGSL KNEFWIGSFI AGNLLPLILS 480
  481 ILSSDPLMLA AAAILGLCGV FYTEKVWVQA PQRVPLS

Type	Start	End	Confidence
Cytoplasmic	1	250	0.99
Transmembrane Helix	251	273	0.88
Non-Cytoplasmic	274	281	0.80
Transmembrane Helix	282	300	0.98
Cytoplasmic	301	320	0.92
Transmembrane Helix	321	341	0.95
Non-Cytoplasmic	342	352	0.88
Transmembrane Helix	353	374	0.93
Cytoplasmic	375	386	0.88
Transmembrane Helix	387	410	0.88
Non-Cytoplasmic	411	418	0.79
Transmembrane Helix	419	441	0.88
Cytoplasmic	442	461	0.93
Transmembrane Helix	462	482	0.90
Non-Cytoplasmic	483	486	0.85
Transmembrane Helix	487	508	0.86
Cytoplasmic	509	517	0.94