YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75763164, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEVKRQTSE KNNIQSKTKQ EHKPSQNAIV HFTNDFASNL ELIKQQIGHN SDVRFRKFNI  60
   61 GRTDIQAGIV FVDGLSDKEI IDKHIMKLLM DDFSDEYKNE TSYVEGTVSK EYIKNKVLTI 120
  121 SEVAEVHYIK DLIPKVLIGS TALLIDGLAD VFILGTTKAN KRNIEEPVSE ALVRGPRVGF 180
  181 TEVLSDNTSL LRRHCADESL SLVKLPVGER AKKELVVAFI RDLASTELVD EVKNRIQKID 240
  241 IDSVLESGYI EQLIEDNYLS PFPQIQNTER PDRVISALME GRVAILLDGT PFVLIAPVTF 300
  301 SMLLQSPEDY YERWLPGTLL RLLRFMTAFV SLFAPALYIS FISFHPGLIP TKLAISIIGS 360
  361 REGVPFPALI EALIMEVAIE VLREAGLRLP KPIGPAMGIV GGLIIGQAAV EAGIVSPIMV 420
  421 IVVAVTAISS FTIPQYSVGI TLRILRFVAM FCAAIFGLYG VILFFLLLCS HLVKLKSFGV 480
  481 PYTSPAVPYR FSDWKDFMVR MPLKIMRRRP KIMIPKKISA KCS

Type	Start	End	Confidence
Cytoplasmic	1	282	0.61
Transmembrane Helix	283	304	0.74
Non-Cytoplasmic	305	321	0.48
Transmembrane Helix	322	345	0.85
Cytoplasmic	346	391	0.51
Transmembrane Helix	392	410	0.77
Non-Cytoplasmic	411	413	0.51
Transmembrane Helix	414	438	0.77
Cytoplasmic	439	446	0.59
Transmembrane Helix	447	468	0.94
Non-Cytoplasmic	469	523	0.68