YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|74489121, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.78
Transmembrane Helix	21	39	0.79
Non-Cytoplasmic	40	201	0.95
Transmembrane Helix	202	226	0.90
Cytoplasmic	227	233	0.83
Transmembrane Helix	234	252	0.90
Non-Cytoplasmic	253	258	0.55
Transmembrane Helix	259	279	0.80
Cytoplasmic	280	294	0.60
Transmembrane Helix	295	320	0.82
Non-Cytoplasmic	321	330	0.65
Transmembrane Helix	331	351	0.86
Cytoplasmic	352	360	0.55
Transmembrane Helix	361	387	0.83
Non-Cytoplasmic	388	422	0.74
Transmembrane Helix	423	442	0.92
Cytoplasmic	443	449	0.93
Transmembrane Helix	450	469	0.95
Non-Cytoplasmic	470	748	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVFCLFLNI FFCLYRTSRK TFFFCIVACF SGAIYTSYVQ GWNKSLGESY GVTRGVIQNT  60
   61 PLVNGDRLSF QFEDHNKNIV QLSYRIKSAL EKEKMQQLYA GISCVFEGER KEPQTARNFH 120
  121 GFNYRDYLYK QHIHFTFEAT YISECYKTSL SLMQWILLLR QQAISKVTEM FPEQSGAFMN 180
  181 ALLFGDRQQM TFEVEEQYQQ FGLIHLLAIS GSHIVLLMGI VYFILLRSGA TREVATICLI 240
  241 VCIPLYMVLA GASPSVIRAS IAGVLMLIAF MCSIRLSSLD ALSVTAICML IYDPYLVFNI 300
  301 GFQFSFVGSF ALLLSAPFLL GSSNGVIRNS IYISIISQLV STPILLYHFG YFSPYSIFLN 360
  361 LLYVPFLSII VLPCSIIILL CMPIVPFLAK GFANVLSIGL SMSNDFLSYC ESLPFTQLVF 420
  421 GKTPFNLVAV YCASIVSILM VWERRAPKKM VCIVVSVFLF ISTCHYVYPY FRGSGSVTFI 480
  481 DVGQGDAILI RLPYDKGIYL IDTGGTLRVN KEEWQQKKHE FSVGNNVLIP YLQKEGIKTI 540
  541 DKLIVTHGDA DHIGAAQELL SYIPVKEVVF GRKGKDAVLE KVVKKQALEK EMKITEVGEG 600
  601 ESWSVNEAEF FVLAPKGKEK SENNASIVIW AKFGGLTWLF TGDLEEEGEQ FLVSAYPDLR 660
  661 VDVLKVAHHG SNTSSIESFL NVIQPRVAII SVGKQNRYGH PHKEVIERLE KMGSAIWRTD 720
  721 KQGAISYVFK GENGTFQSKI TYDKSYNR