YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75763508, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	31	0.98
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	154	0.99
Transmembrane Helix	155	175	0.94
Cytoplasmic	176	188	0.88
Transmembrane Helix	189	209	0.93
Non-Cytoplasmic	210	234	0.93
Transmembrane Helix	235	256	0.91
Cytoplasmic	257	264	0.86
Transmembrane Helix	265	284	0.92
Non-Cytoplasmic	285	301	0.84
Transmembrane Helix	302	322	0.95
Cytoplasmic	323	341	0.92
Transmembrane Helix	342	362	0.94
Non-Cytoplasmic	363	375	0.77
Transmembrane Helix	376	396	0.95
Cytoplasmic	397	407	0.90
Transmembrane Helix	408	428	0.90
Non-Cytoplasmic	429	549	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVKVMRRLG AWLLLACVLI ILIPKSTSAH AYVVKSNPVE NETLKKAPSV VKIEFDEDIQ  60
   61 VSSFNTLYVR DTSGKRVDLK DAHIDKKNKK LLEAGLKENL KNGLYSIQWK VISADGHPIQ 120
  121 GVIPFRIGLA EAGTDDVQVE EMGYVPQIDM IMERGILYAS FLLFLGVLFF NLIMYKGNAT 180
  181 SVRSRSKNII WISLFGIFIS LLFNLPLQAK INADVSWLEA FNPLLLKETL QLSVFGYVWI 240
  241 TQMVLISSLI IVTYFAMKCG KLSSFKVWSI PIVLFIGILV MKAFNSHAYG LKFKEIAVVM 300
  301 DFLHLFAASL WIGGLSSIIL LLRKEDDKWS MYWDMIKRFS PWATGAVIVI LITGLFNSTF 360
  361 FIPTIHSLFD TKYGLALLAK ILLFIFMGIL GIVHYVKGKM RAQKGLGATV KVEFIIGIII 420
  421 FVIVAFMTNV QTPPMPPTGP FTESKQLDNG YELTLHVSPN KVGQNTFHIT LKDENGQPVT 480
  481 DMEQIILTTQ SLDMNMGKGS FKVSAVSPGE YEAEGMYINM TGNWNIHVHG LTKSLDSFDT 540
  541 DYKFIVGGR