YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|218541522, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIFNLVMVA ILIAFTGFFV AAEFAIVKIR SSRIDQLVAE GKRGALAAKK VTTNLDEYLS  60
   61 ACQLGITVTA MGLGWLGEPT IEKLLHPLFE KWNLNPSISS VLTFGLAFMI MTYLHVVVGE 120
  121 LAPKTMAIQK AERVTLLLAG PLMMFYKVMY PFIWVLNGSA RVITGLFGLK PASEHEVAHT 180
  181 EEELRLILSD SYESGEINQA EYKYVNNIFE FDNRIAKEIM VPRTEIIGFY LEDSVEEHMK 240
  241 VIQNERYTRY PIFGEDKDDI IGMVNVKDFF IRYMTEDQKD LSFIRSYMRP IIEVMETTPI 300
  301 HDLLLQMQKK RIPMAVLYDE YGGTAGIVTL EDILEEIVGE IRDEYDEDEA PPIQHVNEQH 360
  361 IIVDGKVLIS EVKDLFGLHI EEDDVDTIGG WIMMQNHEIE EGQHVEAEGY EFKVLEKDAY 420
  421 QIKRVEIRKM EQEQEEEKAA TV

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.85
Transmembrane Helix	6	27	0.91
Cytoplasmic	28	57	0.84
Transmembrane Helix	58	77	0.76
Non-Cytoplasmic	78	96	0.81
Transmembrane Helix	97	118	0.89
Cytoplasmic	119	133	0.80
Transmembrane Helix	134	154	0.83
Non-Cytoplasmic	155	442	0.87