YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86146988, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.90
Transmembrane Helix	18	37	0.93
Non-Cytoplasmic	38	70	0.87
Transmembrane Helix	71	92	0.91
Cytoplasmic	93	99	0.83
Transmembrane Helix	100	119	0.93
Non-Cytoplasmic	120	126	0.66
Transmembrane Helix	127	146	0.92
Cytoplasmic	147	155	0.75
Transmembrane Helix	156	177	0.94
Non-Cytoplasmic	178	197	0.90
Transmembrane Helix	198	218	0.87
Cytoplasmic	219	238	0.72
Transmembrane Helix	239	257	0.82
Non-Cytoplasmic	258	261	0.60
Transmembrane Helix	262	280	0.87
Cytoplasmic	281	286	0.85
Transmembrane Helix	287	306	0.94
Non-Cytoplasmic	307	314	0.75
Transmembrane Helix	315	335	0.93
Cytoplasmic	336	360	0.86
Transmembrane Helix	361	380	0.94
Non-Cytoplasmic	381	398	0.92
Transmembrane Helix	399	419	0.92
Cytoplasmic	420	431	0.78
Transmembrane Helix	432	452	0.95
Non-Cytoplasmic	453	458	0.80
Transmembrane Helix	459	477	0.83
Cytoplasmic	478	486	0.71
Transmembrane Helix	487	506	0.68
Non-Cytoplasmic	507	525	0.48
Transmembrane Helix	526	549	0.82
Cytoplasmic	550	555	0.35
Transmembrane Helix	556	573	0.34
Non-Cytoplasmic	574	574	0.45
Transmembrane Helix	575	601	0.85
Cytoplasmic	602	613	0.73
Transmembrane Helix	614	635	0.89
Non-Cytoplasmic	636	642	0.68
Transmembrane Helix	643	662	0.96
Cytoplasmic	663	665	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATAKIEKTV TGRFNIKAAA LPVAAVLLIS SLLQITAPYS QGVGLIWDTL FHFDSSNYQH  60
   61 LITHLTYLPR LTVALICGFA LAVAGCVMQF VLRNPIASPT TLGVAAGAEL GMVLGILLIP 120
  121 ANLAIPGFIP AFIGGCLATG LVFTLSSSRG FSPLHMVLAG MVVSLFLGSL NTMLLMLHEQ 180
  181 RLTSIFVWGA GVLNQNDWSS VQVLIPLVSI PTLLLLVLQR PLSALQFGDN VATSLGVNIK 240
  241 QIKLLCLSLA IFITAAVVSE VGLIGFVGIV APAIARLIGI RALAKQILVS GLVGSFILLI 300
  301 VDLLIQPFSG FGGELLPTGA MTALLGAPFL LWLLQRTKLQ SDLKNRSETI EHYKFVSTRK 360
  361 VLAAMSVLLM VMCVLALTVG KNQFGWNLEL NSSLFDLRLP RVLVALLAGI GLAFAGTIIQ 420
  421 RISNNPMASP EVLGISSGAA LALVLGTLFG TAVGREEQML LGTLGATSVT AVVWLMGRKH 480
  481 NFAPTQTLLT GIALSAGLDA LLRITMSSGN ENATALLTWL SGSTYLVANQ DVILLAVGVA 540
  541 IISAVALSLN RWIELINLGD VTTSSLGMNT TAVRLALLLL VAALTTLCTI VIGPLSFIGL 600
  601 LAPHMARSLH QYRAIPQMLT AALLGAIIMV AADWIGRTLW FPWQFPAGLL ASLIGGGYFL 660
  661 YLMRK