YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|254223827, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.98
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSQRNILLI ALALVSFLLF QQWQVAKNPA PQATQQAQST GAAPAPSFSD ELDPTPAQNV  60
   61 AAKAKTITVS TDVLTLSIDT LGGDVVSAKL NQYSEELNSP ESFVLLQNTQ GHQFIAQSGL 120
  121 VGPQGIDVTS NNRPAYQVSA DSFTLAEGQD ELRIPMTYQA NGIDYTKTFI LKRGSYAVDV 180
  181 VFDVANNSGS EATLGMYAHL RQNLLDSGGN LAMPTYRGGA YSTSDVRYKK YSFDDMKDRN 240
  241 LSAPNDVTVN WVAMIQHYFA SAWIPRDEPQ AQLYSRVINN LGDMGIRTPN KTIANGDKAE 300
  301 FEATLWVGPK LQDQMAATAP NLDLVVDYGW LWFIAKPLHW LLSVIQNFVG NWGVAIICLT 360
  361 FIVRGAMYPL TKAQYTSMAK MRMLQPKLQA MRERIGDDRQ RMSQEMMELY KKEKVNPLGG 420
  421 CLPILLQMPI FIALYWALME SVELRHSPFF GWIHDLSAQD PYYILPLLMG ASMFVIQKMS 480
  481 PTTITDPMQQ KIMTFMPVMF TFFFLWFPSG LVLYWLVSNI VTLIQQTLIY KALEKKGLHS 540
  541 K

Type	Start	End	Confidence
Signal Peptide	1	26	0.93
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	347	0.99
Transmembrane Helix	348	368	0.90
Cytoplasmic	369	415	0.96
Transmembrane Helix	416	439	0.90
Non-Cytoplasmic	440	459	0.93
Transmembrane Helix	460	477	0.91
Cytoplasmic	478	494	0.78
Transmembrane Helix	495	517	0.88
Non-Cytoplasmic	518	541	0.85