YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|194538393, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANTFSLMLV IATLVTGVVW LLEKLVFAKK RQEKLAEIQA QTSNGLDAVT LQKVERQPWW  60
   61 VENSVSIFPV IAFVLVLRSF IYEPFQIPSG SMMPTLLVGD FILVEKYAYG LKDPVWRTQL 120
  121 VETGKPERGD IVVFKYPPQP SVDYIKRVVG LPGDIVRYSS DKQLCVQSQG ESACKPVKLS 180
  181 NVEESQFSSN GIPMIQLDEK LGNVEHNILV NPLVRNRVEQ YFPRSGTTEW VVPQGQYFVM 240
  241 GDNRDNSADS RYWGFVPEAN LVGKAVAIWI SFEFDRGADS VLPSWIPTGV RFNRIGGIH

Type	Start	End	Confidence
Signal Peptide	1	28	0.42
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	299	0.81