YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|151938259, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.81
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.81
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	251	0.90
Transmembrane Helix	252	272	0.93
Cytoplasmic	273	282	0.76
Transmembrane Helix	283	307	0.88
Non-Cytoplasmic	308	322	0.78
Transmembrane Helix	323	346	0.88
Cytoplasmic	347	364	0.83
Transmembrane Helix	365	386	0.94
Non-Cytoplasmic	387	405	0.81
Transmembrane Helix	406	426	0.85
Cytoplasmic	427	442	0.61
Transmembrane Helix	443	466	0.82
Non-Cytoplasmic	467	477	0.79
Transmembrane Helix	478	499	0.79
Cytoplasmic	500	505	0.81
Transmembrane Helix	506	529	0.84
Non-Cytoplasmic	530	545	0.75
Transmembrane Helix	546	567	0.90
Cytoplasmic	568	579	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIAIITACP SGVANSILAA GLLEQAAAKL TWNAKIECQS SVVEPTLLTE ADVEQAEVII  60
   61 IAANTSVDTS RFVGKKVYQA EISEVAKDAT TFLQQAVENA TLLEKATTLA APITPEATSA 120
  121 AKKIVAITAC PTGVAHTFMA AEALEEEGKR RGHQIKVETR GSVGAKNQLT DQDIADADLV 180
  181 IIAADIEVPL DRFNGKKMYR TKTGPALKKT AEEMDKAFEQ ATIYQHSGSA NSASAADEKK 240
  241 GAYKHLMTGV SHMLPVVVAG GLIIALSFVF GIEAFKEEGT LAAALMNIGG GSAFALMIPV 300
  301 LAGYIAFSIA DRPGLAPGLV GGMLASSTGA GFLGGIAAGF IAGYAAKLLA DKVKLPQSME 360
  361 ALKPILIIPF VATLFTGLVM IYIVGGPVSG IMNSLTDFLN NMGSDSAVLL GIILGAMMCF 420
  421 DLGGPVNKAA YAFGVGLLAS QTYAPMAAIM AAGMVPALGM GLATFIAKNK FEQNEREAGK 480
  481 ASFVLGLCFI SEGAIPFAAK DPMRVIPSCM AGGALTGALS MLFGAKLMAP HGGLFVLLIP 540
  541 NAISPVLMYL VAIAAGTAVT GFTYAFLKSK AEAKQEVAA