YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86168315, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSPAPRLPQ LKRLARPWLL PVLALAAVIC GGALGYRITE GWDWGDCLWM VLITITTIGY  60
   61 GEVEPLSQAG RLVTVLIIAG GLVVVQLSIQ RLLGLTESGY FRQLRELRFR RILRRMHNHV 120
  121 ILCGYGRIGR EISAQLQLDN VPVLVVELDP ERRQAAEESG LRVLQADATL DETLLEAGLE 180
  181 RCRSLVAALP SNAANLYVVL SARGLKPRCR LIARADSEES AAKLRLAGAN VVVSPYVAGG 240
  241 RMMAATALRP LAVDFMDLLA GSDCEIEEFQ LSNDPLLLHH LPGRSLSELQ LGRRTGAMVL 300
  301 AIRDRGRLIA NPGGDVVLAP GQLLVVLGSK GQLRLLRDLL GSAVDMVETM GRTGGG

Type	Start	End	Confidence
Cytoplasmic	1	16	0.68
Transmembrane Helix	17	36	0.69
Non-Cytoplasmic	37	46	0.74
Transmembrane Helix	47	63	0.54
Cytoplasmic	64	71	0.46
Transmembrane Helix	72	89	0.70
Non-Cytoplasmic	90	356	0.87