YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67981567, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.67
Transmembrane Helix	12	34	0.64
Non-Cytoplasmic	35	340	0.99
Transmembrane Helix	341	360	0.96
Cytoplasmic	361	366	0.86
Transmembrane Helix	367	388	0.90
Non-Cytoplasmic	389	393	0.71
Transmembrane Helix	394	414	0.91
Cytoplasmic	415	438	0.86
Transmembrane Helix	439	460	0.90
Non-Cytoplasmic	461	472	0.80
Transmembrane Helix	473	500	0.77
Cytoplasmic	501	529	0.94
Transmembrane Helix	530	552	0.89
Non-Cytoplasmic	553	864	0.90
Transmembrane Helix	865	884	0.95
Cytoplasmic	885	890	0.79
Transmembrane Helix	891	913	0.89
Non-Cytoplasmic	914	919	0.71
Transmembrane Helix	920	939	0.89
Cytoplasmic	940	967	0.91
Transmembrane Helix	968	989	0.90
Non-Cytoplasmic	990	999	0.78
Transmembrane Helix	1000	1023	0.91
Cytoplasmic	1024	1040	0.94
Transmembrane Helix	1041	1062	0.91
Non-Cytoplasmic	1063	1503	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISRVFIERP RLAGVVSIVL MLAGILSVFA LPIAQYPQVT PPQVNVRASY PGASAEVLAA  60
   61 TVASPIEDAV NGVENMIYMS SSSDNTGSYQ LTISFEVGTD TDMAQVKVQN RVAQAEPLLP 120
  121 SEVTQQGVTV ETESSDMLGF MLLRSTDGSL DDLYLSDYAS KIIKPALERI AGVSRAQVWG 180
  181 AQYSMRVWMD ADRLAALNLS PEDVASAIRA QNLQASIGSL GATPGDGSSK LVYSLKTEGR 240
  241 LNDPDAFADI VIRTAADGAV VYLKDVARVE KGADQYLYNA KYNGDNCVAM GLNRTPGSNA 300
  301 LDTMDAVRSE LEHLKAQFPE GLELVLPYDA TEFVRTSIWE IATTLGLTFF LVVLVCYVFL 360
  361 QNWRATLIPA LTIPVSLCAT FMVLSVLGYS INILTLFGLV LAIGLVVDDA IVVVERVMEL 420
  421 MTREGLSPKE ATIKTMEQVS GAVIATTLVL LAIFVPVGFM EGITGKIYQQ FSVAISAAVL 480
  481 FSTVNALTLS PALCATMLSI VPPKEHGPLK WFNTTLGRLR GHYVALSLGI ARRLVVTALI 540
  541 LLGAIGGSYF LFSHSSTTFL PDEDQGIIFG MLQLPEGASL GRTSRVLDEV VSPLKDEEGV 600
  601 NFVMQITGFS MMGGSGENVA FFLVGLENWA KRDSADLTIS AIQQKLQGRV AAVPSAQINL 660
  661 FTPPAIMGLG VSGGMDIRLL STEEDDPQKL QAVLNSFLMQ LNMAPEIMMA FSTYSSNTPH 720
  721 LHLEVDRVKA ALMNVDVNRL FGVLQNYFGS LYVNDVNFAG QVNKVVIQAD WPFRNNVDAL 780
  781 EGIYVQSTTG AMVPLRSLVT IDTMQAPRNI ERYNKFTSAS INAVAMPSTS SGDAMAKVAA 840
  841 VAQQNLPRGY TFDWSSLSYQ EARSSGGTYV LLLMAVLFGY LFLVAQYESW IIPLPVIVST 900
  901 AVAIFGALAG LIAVSLPLSI YAQLGIILLV GLASKNAILI VEFSKTQREE GLSILEAASE 960
  961 GAGQRFRAVL MTAFTFILGV LPMVFASGAG SASRRSIGTT VFFGMVAATL VGIVLVPALY1020
 1021 VMFQTWREKG HAFRLRHSRS HLTTLVLMIL PFIMNGCITV GPDYQRPDPV VIEGAFEQAV1080
 1081 DVGDWWTQFN DPLLTELVQQ ALANNRDLKT AVARVREARA TLARSKAALW PTLDALGSVS1140
 1141 RSKTSENASE NAGESTLYDT GVNAAWEIDV FGGTRRSVEA ANADWQSMLI DLGDVQVSVA1200
 1201 AETALAYIAL RTVQYQLVVA RDNLAIQQET HAILADRRQA GLDNDLALQQ ATYNLESTRS1260
 1261 SIPTLEAKVE SAYNALCVLI GVLPGSVALE PLSQIPRSTV EVEGIPADLL RRRPDVQRAE1320
 1321 RQLAAQTARI GVATADLYPR FTLTGSIGLE SLNTSDLLTS ESERYSIIPG VQWPIFYFGS1380
 1381 IRNNIKVQQA VREQYLQAYE SAVLTAVEEV RNALMDYRKE QERYVALNRA VTAAQTAEFL1440
 1441 AKDQYRNGLT DFNAVLDAQR SLLSFQEQRV VSEGAVSQNI VRLYRAMGGG WTPMEALQEM1500
 1501 EMR