YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76261013, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWYFTPYILL PLAAVLLALG AMRLAWPYRR LPVAKVFLGL MFSTIWWSMC HALELSNATI  60
   61 AGKVLLSNIQ YISVVSVPLL WLLFALCYTD RAHLLPRSVL YSLILLQSGF LIGAWTNGWH 120
  121 RLMWPRVELT YTAGGLWVLT GPHGPLWYAS VLSAYAMVFA GTVLMINQAI RSQSLYRAQA 180
  181 ISLVVGALLP WAASMLFVTG LSPIPFVDPT PVAFALGGLA FTVAMQRYRA LDLLPAARER 240
  241 IVDQMPDAII VLDMHDRIID LNPAAQAILS ATTDVLGKSL ARVAPPWLIE QVRDRYEGQF 300
  301 EVQQTGETGT TTYDLRCTTL RDRDGSPAGR IFVLRDITLF KQAAQALQEA KEAAEAASQA 360
  361 KSAFLSMMSH ELRTPLTAIL GYSEFLREDL LNRDLHSLTS DLDRIITAGR HLLTLINDIL 420
  421 DYARLEANAV TIHPEPVHMS TLINEVVMTL QGLAKQGQNT ITVTVEPDLP PVLADPVRLR 480
  481 QVLLNLVGNA CKFTGQGEIR VHCYRSTTAE IQIDVSDTGI GIAADQLQHL FKPFVQVDNG 540
  541 PTRRYGGTGL GLAICQRLCQ VMGGAILVTS EPGRGSTFSV RLPITGVPSA PCEVSQEDG

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.90
Transmembrane Helix	7	26	0.95
Cytoplasmic	27	32	0.88
Transmembrane Helix	33	55	0.84
Non-Cytoplasmic	56	68	0.79
Transmembrane Helix	69	88	0.94
Cytoplasmic	89	97	0.84
Transmembrane Helix	98	119	0.88
Non-Cytoplasmic	120	145	0.93
Transmembrane Helix	146	166	0.95
Cytoplasmic	167	179	0.76
Transmembrane Helix	180	201	0.87
Non-Cytoplasmic	202	209	0.74
Transmembrane Helix	210	230	0.77
Cytoplasmic	231	599	0.84