YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|69276420, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.93
Transmembrane Helix	17	41	0.86
Non-Cytoplasmic	42	49	0.84
Transmembrane Helix	50	72	0.90
Cytoplasmic	73	81	0.81
Transmembrane Helix	82	116	0.76
Non-Cytoplasmic	117	159	0.45
Transmembrane Helix	160	189	0.81
Cytoplasmic	190	225	0.90
Transmembrane Helix	226	248	0.92
Non-Cytoplasmic	249	255	0.87
Transmembrane Helix	256	277	0.95
Cytoplasmic	278	287	0.89
Transmembrane Helix	288	307	0.93
Non-Cytoplasmic	308	314	0.69
Transmembrane Helix	315	335	0.91
Cytoplasmic	336	346	0.75
Transmembrane Helix	347	367	0.90
Non-Cytoplasmic	368	375	0.77
Transmembrane Helix	376	398	0.89
Cytoplasmic	399	541	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPGSPLAKPF HNIDFRLLWS ASLVSNLGGL VQAVGAGWLM ATIADSADMV ALVQSATTLP  60
   61 VMIFSLAAGA LADNIDRRRI MLTAQLLMML VSVVLAYFAM AGMMTPWLLL AFTFLIGCGT 120
  121 ALHNPSWQAS MGDIVPKEDI PAAVTLNSMA FNIMRSVGPA IGGFIVAVAG AATAFALNAV 180
  181 SYIPLIIALM RWKHRRLPSS LPREAFAHAI SAGLRYVAMS PNLTRVIFRG FVFGLGAIAI 240
  241 LALLPLVARD LVGGSAITYG LLLGSFGIGA IGGALLNTRI REKFNNETIA RGAFVIFALC 300
  301 ALTLGLSRQV WLSCFSLLPA GACWVLALSL LNVSVQLSTP RWVVGRALSI YQTATFGGMA 360
  361 AGSWVWGQAA EIYGPANALM ASTIVLVLGA AIGLRFALPE FARLNLDPLG EFQEPALRLD 420
  421 LRARSGPIMI MVDYEIAQED LPAFLAAMAE RRRIRIRDGA RQWGLLRDLE NPNIWTETYH 480
  481 VPTWVEYVRH NLRRTKADAE ISEELRKLHR GKGPPRVHRM IERQTVPLRD DMPIKENPEV 540
  541 P