YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148720028, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.87
Transmembrane Helix	13	31	0.85
Non-Cytoplasmic	32	39	0.59
Transmembrane Helix	40	57	0.57
Cytoplasmic	58	114	0.68
Transmembrane Helix	115	135	0.71
Non-Cytoplasmic	136	150	0.70
Transmembrane Helix	151	169	0.86
Cytoplasmic	170	443	0.70
Transmembrane Helix	444	465	0.58
Non-Cytoplasmic	466	495	0.58
Transmembrane Helix	496	513	0.47
Cytoplasmic	514	525	0.39
Transmembrane Helix	526	549	0.73
Non-Cytoplasmic	550	556	0.37
Transmembrane Helix	557	582	0.59
Cytoplasmic	583	922	0.67
Transmembrane Helix	923	944	0.65
Non-Cytoplasmic	945	964	0.66
Transmembrane Helix	965	986	0.73
Cytoplasmic	987	993	0.56
Transmembrane Helix	994	1016	0.63
Non-Cytoplasmic	1017	1061	0.53
Transmembrane Helix	1062	1080	0.42
Cytoplasmic	1081	1368	0.59
Transmembrane Helix	1369	1403	0.50
Non-Cytoplasmic	1404	1420	0.54
Transmembrane Helix	1421	1444	0.65
Cytoplasmic	1445	1453	0.43
Transmembrane Helix	1454	1476	0.68
Non-Cytoplasmic	1477	1483	0.57
Transmembrane Helix	1484	1504	0.42
Cytoplasmic	1505	1737	0.70
Transmembrane Helix	1738	1756	0.54
Non-Cytoplasmic	1757	1796	0.40
Transmembrane Helix	1797	1831	0.64
Cytoplasmic	1832	1846	0.43
Transmembrane Helix	1847	1873	0.69
Non-Cytoplasmic	1874	1888	0.47
Transmembrane Helix	1889	1909	0.53
Cytoplasmic	1910	2196	0.68
Transmembrane Helix	2197	2231	0.67
Non-Cytoplasmic	2232	2253	0.47
Transmembrane Helix	2254	2277	0.55
Cytoplasmic	2278	2278	0.30
Transmembrane Helix	2279	2306	0.69
Non-Cytoplasmic	2307	2320	0.53
Transmembrane Helix	2321	2345	0.69
Cytoplasmic	2346	2351	0.42
Transmembrane Helix	2352	2375	0.59
Non-Cytoplasmic	2376	2411	0.43
Transmembrane Helix	2412	2434	0.49
Cytoplasmic	2435	2670	0.74
Transmembrane Helix	2671	2694	0.75
Non-Cytoplasmic	2695	2703	0.66
Transmembrane Helix	2704	2726	0.61
Cytoplasmic	2727	2735	0.40
Transmembrane Helix	2736	2759	0.63
Non-Cytoplasmic	2760	2775	0.55
Transmembrane Helix	2776	2797	0.61
Cytoplasmic	2798	3094	0.57
Transmembrane Helix	3095	3117	0.59
Non-Cytoplasmic	3118	3140	0.55
Transmembrane Helix	3141	3163	0.72
Cytoplasmic	3164	3166	0.60

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDFVVSAPEV NSLRMYLGAG SGPMLAAAAA WDGLADELAV AASWFGSVTS GLADAAWRGP  60
   61 AAVAMARAVA PYLGWLISAT AQAEQAAAQA RVAVATFEAA RAATVHPAIV AANRAVLVSL 120
  121 VSSNLLGFNA PAIAATEAAY ERMWAQDVAA MVGYHAGASA AVSALMPFTQ QLKKLAGLSE 180
  181 RLTSAAAAAA GPPSAAGFNL GLANVGANNV GNGNVGVFNV GFGNLGSYNL GFANLGSDNL 240
  241 GLANLGGHNI GFANTGSNNV GFGNTGSNNV GIGLTGNGQI GFGSFNSGSH NIGLFNSGSG 300
  301 NVGLFNSGTG NFGIGNSGTG NFGLGNTGST NTGWFNTGDV NTGGFNPGSY NTGNFNTGNY 360
  361 NTGSFNAGNY NTGYFNTGDY NTGVANTGNV NTGAFIAGNY SNGVLWRGDY QGLIGADIAL 420
  421 EIPAIPINAQ LFSMPIHQVM VMPGSVMTIP GMRLPFTSIV PFVVYYGPVE LPQSTLTLPT 480
  481 VTITVGGPTT TIDGNLTGMV GGVSIPLIKI PAAPGFGNST TSPSSGFFNA GAGTASGFGN 540
  541 FGGGASGFWN LASATSGLSG FGNVGALGSG VANVGNTISG LYNTSTSNLA TPAFNSGLLH 600
  601 HSVGTMTLNF GLANVGGNNV GGANAGIFNV GLANLGDYNI GFGNLGGDNL GFAHAGSYNI 660
  661 GFANTGSNNL GFANTGDNNI GFANIGSNNI GIGLTGSGQI GFGSLNSGSH NIGLFNSGDG 720
  721 NIGLFNSGSG NFGIGNAGTG NWGIGNSGAG NFGIGNAGST NTGLFNSGDL NTGSLNPGSY 780
  781 NTGSVNTGSV NTGGFNAGNY NTGYFNTGDY NTGMANTGNI NTGAFISGNH SNGLLWRGDN 840
  841 QGLIDLAIGV DIPEIPIVSV DVNIPIHIPI TASFTDIVYS GLDLPPNTAV TVIFFGPVDI 900
  901 DPFTVPVIRI TGPTPVVMVG GPTTAINIGA TVVVDAINIP IIHIPATPGF GNSTGGLSSG 960
  961 FFNSGAGSAS GFGNFGGAAS GFMNLVSTTS GMSGFLNVGA LGSGVANVGN TISGIYNVGT1020
 1021 SDLSTPAVNS GLANIGTNIA GLLRDGAGTA AINLGLANHG NLNVGFASLG GFNFGGATIG1080
 1081 HNNVGIGNTG IFDVGLANLG SYNIGFGNLG DDNLGFGNFG SYNIGFGNVG NDNLGFANAG1140
 1141 GGNIGFANTG SNNVGFGNTG SNNVGIGLTG NGQIGFGSFN SGSGNIGLFN SGSNNIGFFN1200
 1201 SGSGNFGIAN SGSFNTGIGN TGNTNTGLFN SGDVNTGAFN PGSFNTGSFN TGSFNTGGFN1260
 1261 PGNTNTGYLN IGNYNTGIAN TGDVDTGAFI TGNYSNGLFL SGDYQGLVGL NLVIDMPLPI1320
 1321 SLGVNIPIDI PITASAGNIT LMGVTIPPTG DIVLSSIAGQ RAHFGPITIP NITVVGPTTT1380
 1381 VAIGGPNTAI TITGGGAIRI PLISIPAAPG FGNSTTNPSS GFFNTGAGGA SGFGNFGGAN1440
 1441 SGFWNLASAT SGASGLLNVG ALGSGLANVG TTVSGFYNTS TSDLATPAFN SGLANISTSI1500
 1501 AGLLRDSTGT MVLNLGLANH GTLNVGIANL GDYNIGFANL GSANFGSANI GGNNIGGANT1560
 1561 GIFDIGLANL GSYNIGFGNF GDDNLGFANT GSNNIGFANT GSNNIGIGLT GDGQIGFGSL1620
 1621 NSGSGNIGLF NSGSGNIGFF NSGNGNVGIG NTGTANFGLG NTGSTNTGFF NSGDVNTGIG1680
 1681 NTGSFNTGSF NPGDSNTGDF NPGSYNTGLG NTGDVDTGAF ISGSYSNGFL WSGNYQGLIG1740
 1741 LHAALAIPEI ALTFGVDIPI HIPINIDAGV VTLQGFSIVA AENNIDFTPI IIPTINITLP1800
 1801 TAAITVGGPT TSIGITASAG IGSITIPIID IPATSGFGNS TTSPSSGFFN SGAGSASGFL1860
 1861 NVVAGASGIS GYLNVGALGS GVTNVGHTVS GFYNASALDL VTPAFASGLM RDGMGTMTLN1920
 1921 LGLANLGSNN AGFGNTGIFD VGVANLGNYN IGFGNFGDDN LGFANLGSYN IGVANTGSNN1980
 1981 IGFANTGSNN IGIGLTGTGQ IGIGALNSGS GNIGLFNSGD GNIGFFNSGT GNFGIGNTGT2040
 2041 GNFGIGNSGS TSTGLFNSGD GNTGGFNPGN FNTGNFNTGS FNTGGFNAGN TNTGHFNTGN2100
 2101 YNTGIANTGD VSTGAFISGN YSNGILWRGD YQGLIGYSYA LTIPEIPAHL DVNIPIDIPI2160
 2161 TGSFTDLVVD NFTIPIIGFE SFAFSFHIHT EPDIGPIIVP SFVLSVPTFA IAVGGPTTAI2220
 2221 NISATAGLGP ITIPIIDIPA APGIGNSTTS PSSGFFNTGA GTASGFGNVG GNTSGLWNLA2280
 2281 SAASGVSGLL NVGALGSGVA NVGNTISGIY NTSPLDLGTP AFGSGLANIA GLLQGGAGTT2340
 2341 ILDLAGLGNL NVGLANLGGS NFGIGNTGIF NVGFANVGNH NIGLANLGNY SVGFANSGNY2400
 2401 HIGIANTGSA NIGFANTGSG NIGIGLTGTG QIGFGSFNSG SHNIGLFNSG DGNVGFFNSG2460
 2461 TGNVGIGNTG TANFGIANSG SFNTGLGNTG STNTGLFNPG NVNTGVGNTG SINTGSINTG2520
 2521 SFNTGSTNTG SFNLGDHNTG SFNSGDYNTG YFNAGDYNTG VANTGNVNTG AFISGNYSNG2580
 2581 FFWRGDYQGL IGLSTTITIP EIPYRYDLSV PIDIPITGTV VATTPNSFTI PGFQIRVLLG2640
 2641 PAAVLVNEMI GPITIDVNQV IAIDSPIQQT ISMVGTGGFG PIPIGISIGG TPGFGNSTTG2700
 2701 PSSGFFHTGA GHVSGFGNFG AGNMSGSGNF GAGNSGFFNA GGLGNSGLLN FGALQSGLAN2760
 2761 LGNTISGVYN TSTLDLATPA FGSGIANIGA NLAGLFLDNT GNLTLNFGVA NQGGLNAGIG2820
 2821 NLGSVNIGFV NTGDSNLGIG NLGDLNFGGV NIGGNNIGIA NTGIFDIGLA NLGSYNIGLA2880
 2881 NLGDDNLGFG NAGSYNIGFA NFGSDNLGFA NTGSYNIGFA NTGNNNIGVG LTGNGQIGIG2940
 2941 SLNSGSNNIG LFNSGSGNIG FFNSGTGNVG IFNTGTGNFG LANSGGFNTG IGNAGSTNTG3000
 3001 VFNPGDLNTG SFNPGSFNTG GFNPGSGNTG YLNTGDYNTG VANTGDVDTG AFITGSYSNG3060
 3061 FLVSGDYQGL IGLPLLGIPV TPGYFNLTGG PSSGFFNSGA GSVSGFVNSG AGLSGYLNTG3120
 3121 ALGSGVANVG NTISGWLNAS ALDLATPGFL SGIGNFGTNL AGFFRG