YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76590942, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVTVFGIGY VGLVQAAVMA EVGHDVVCVD VDQKKVDKLK QGHIPIYEPG LTPLVKSNYE  60
   61 AGRVDFTTDA ARGIAHGEVV FIAVGTPPDE DGSADLKYVL SVAKTIAEHM DSHKIIINKS 120
  121 TVPVGTADKV IAKVSETLES LGKSVTFDVV SNPEFLKEGA AVNDCMRPDR IIIGTKSESS 180
  181 EKKLRELYSP FNRNHDKIIV MDIRSAELTK YAANCMLATK ISFMNEMSNI AELMGADIEN 240
  241 VRRGIGSDPR IGYQFIYPGC GYGGSCFPKD VQALVRSATG VGYSAKVLEA VEEVNYAQKE 300
  301 KLFEYIMRHF GGDVKGKTVA IWGLSFKPNT DDMREASSRV LMENLWKAGA KVKAYDPEAM 360
  361 EETQRIYGSR DDLDLVGTKE SALNGADFLV ICTEWQAFRA PDFELIKEKL SSPLIFDGRN 420
  421 LFEPNMMLEY GLHYYAIGRG LSVKGQ

Type	Start	End	Confidence
Signal Peptide	1	20	0.86
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	446	0.99