YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116194568, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAPPPQGPP QGGQMPMMPS PEQIAHMQRQ LAIDAEKMGM TVPQFIEHLK RQAQERMQAQ  60
   61 QQQQQQQGQE GEHQHQHQHQ HQHPHPHQHQ HQHPPQGQQQ PIVPGPPNPV AIALAKFLRS 120
  121 QTLKPRTCIL NGERKDMFRV KRALRALQSD AYKAARKKNP ALPEITDRAS LENTFKLLPL 180
  181 SMLALRVVKS DPHEGHDHGP PAKKQGKRTK GLWTVRIEPQ QEAGDDMYYV WLWEGSQVMR 240
  241 KVYAALALAA IFAVVCYPLW PVKLRQGGYY LSWAFLCFMG LFFAMAIFRV ILFCITYFVL 300
  301 SPGFWLFPNL WEDVSVVDSF KPVWAWHEPA AAKKKKKSKK SASGSAAAGA TFSGATGQPA 360
  361 PASATTTATS TQISTGPQQR NYMAPRVEEL EDDE

Type	Start	End	Confidence
Cytoplasmic	1	241	0.79
Transmembrane Helix	242	261	0.96
Non-Cytoplasmic	262	269	0.68
Transmembrane Helix	270	300	0.78
Cytoplasmic	301	394	0.64