YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116193839, gi...
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAFGFKPRA FGLLWRLFCV SETRTGKPGS QRLLSDAQKN AASGGAPPRR SEFARHAADI  60
   61 GRGISGTMGK LQKLAQLAKK RSLFDDNPVE VNELTFIIKQ DLSRLNEDIR NLQGLSKRLH 120
  121 PKPDQEGENN KNILLLLQGK LGDVSANFKD VLEIRTKNIQ ASRSRTEAFV STMGQHAHAS 180
  181 LPPSASPLYG TPSRGTPSPG ADLISLNPMG GDQQLQLQMM EEGQNTYIQQ RGQAIEAIES 240
  241 TINELGSIFG QLASMVSEQS EMIQRIDANT EDVVDNVEGA QKELLKYWSS VSGNRWLIAK 300
  301 MFGVLMVFFL LWVLIAG

Type	Start	End	Confidence
Cytoplasmic	1	295	0.61
Transmembrane Helix	296	316	0.94
Non-Cytoplasmic	317	317	0.62