YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88182721, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.68
Transmembrane Helix	15	39	0.75
Cytoplasmic	40	69	0.73
Transmembrane Helix	70	89	0.76
Non-Cytoplasmic	90	103	0.79
Transmembrane Helix	104	125	0.90
Cytoplasmic	126	143	0.92
Transmembrane Helix	144	170	0.85
Non-Cytoplasmic	171	202	0.71
Transmembrane Helix	203	224	0.82
Cytoplasmic	225	227	0.66
Transmembrane Helix	228	249	0.87
Non-Cytoplasmic	250	286	0.71
Transmembrane Helix	287	303	0.54
Cytoplasmic	304	310	0.50
Transmembrane Helix	311	338	0.76
Non-Cytoplasmic	339	368	0.61
Transmembrane Helix	369	402	0.67
Cytoplasmic	403	420	0.88
Transmembrane Helix	421	445	0.86
Non-Cytoplasmic	446	450	0.80
Transmembrane Helix	451	473	0.92
Cytoplasmic	474	478	0.89
Transmembrane Helix	479	500	0.90
Non-Cytoplasmic	501	522	0.88
Transmembrane Helix	523	542	0.95
Cytoplasmic	543	598	0.96
Transmembrane Helix	599	619	0.89
Non-Cytoplasmic	620	629	0.78
Transmembrane Helix	630	652	0.92
Cytoplasmic	653	707	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHAPSNKDH IANAALGQGV GYGIVVGLGG AFALVDAYTK PGMMLVTFIL RRYNQELQTS  60
   61 EMFNTAGRTV KSGLVSAAVV SSWTWAATLL QSTGVCYRYG VSGPFWYASG ATVQILLFAT 120
  121 LAIELKRRAP NAHTYLEIIK ARYGTFAHLV FLIFGLATNI LVSLMLIVGG SATVNALTGM 180
  181 HTIAASRSRL PASESSKHMA DDVVYLLPVG VVVYTMVGGL KATILTDWAH TFILLIILII 240
  241 FSLTAYASHD VLGSPGVVYD LLVKAAARHP VEGNKDGSYL TMQSREGAIF FVINIVGYYN 300
  301 KAIAASPVHA LPGYLIGGLC WFAIPWLTAT TMGLTALAME DKPGFPTYPD RMADADVTAG 360
  361 LVLPYAAVSL LGKGGAVGTL LIVFMAVTSA TSSQLIAVST ICTYDLYRTY FNPTASGKRL 420
  421 IYTSHAVVVG YGLFIATFSV GLWYAGISMG YLYLMMGVII SAAVLPATLT LVWAGQNKWA 480
  481 ASLSPIVGLA CALIAWLVTA KRECGNLGVA CTGSNYPMLA GNVAALLSPV VLVVIFTLIF 540
  541 GIDKYDWKSM MEIRRGDDHE LTDPVGLSVE EVPVNHNESG AEFDEEQKKL ERASKISKTA 600
  601 TIVMTLAFLV LWPMPMYGTG YIFSKPFFTG WVTVGIIWIF CSFIGVGLFP IFESRKTLAR 660
  661 TFKSIYLDVT GKSHPKTIHA QMAQEEQTPS EATPSEKSGV KQVVKPA