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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|116207282, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.38
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGRPPPGGS SASRNDLLLD LDNDQPVYST GQRSALNDDD LLNSYAYDQG TAAPSRPSVS  60
   61 YDDFVGSGQS RPPAGRPPPS GPSLGSTSRP VGPYGPEIHR QYSQTSDLGN YQRYADDFDD 120
  121 YPDDGGYYQQ GGAMAGGSSS AAVQDARKRN SVLSLGGGFL GRVKNRLGMG QGYSEMDLPL 180
  181 TDPRAGAGPG AGPGGRTDTA GAPPPPKEKK FDMGNFKFGF GRAKVDPSTL GPRIIHLNNP 240
  241 PANAANKYVD NHVSTAKYNI ATFPLKFLFE QFSKFANIFF LFTAGLQQIP GLSPTNQYTT 300
  301 IGPLIVVLLV SAGKELVEDY RRKQADKSLN MSKARVLRGS SFEETKWINV AVGDIVRVES 360
  361 EEPFPADLVL LASSEPEGLC YIETANLDGE TNLKIKQALP ETSSMVSSTE VSRLGGRLRS 420
  421 EQPNSSLYTY EATLTMQAGG GEKELSLNPE QLLLRGATLR NTPWIHGVVV FTGHETKLMR 480
  481 NATAAPIKRT KVERQLNKLV LALVGMLLVL SVISTAGDLI MRRVSGDSLK YLALEELDGA 540
  541 AAIARIFVKD MVTYWVLFSA LVPISLFVTL EMVKYWHGIL INDDLDIYHD VTDTPANCRT 600
  601 SSLVEELGMV EYVFSDKTGT LTCNQMEFKA SSIAGIMYAE TVPEDRVATI EDGVEVGIHE 660
  661 FKQLKKNLEE HPSAQAIHHF LTLLAVCHTV IPERNESGEI KYQAASPDEG ALVDGALQLG 720
  721 YKFFARKPRA VIIEVNGEQL EYELLAVCEF NSTRKRMSTI YRCPDGKVRC YTKGADTVIL 780
  781 ERLNDNNPHV EATLRHLEEY ASEGLRTLCL AMREVSEHEF QEWYQVYDKA QTTVSGNRAE 840
  841 ELDKAAELIE KDFYLLGATA IEDRLQDGVP ETIHTLQEAG IKVWVLTGDR QETAINIGMS 900
  901 CKLLSEDMML LIVNEESADA TRDNLQKKLD AIHNQGDGTI EIGTLALVID GKSLTYALEK 960
  961 DLEKLFLDLA VKCKAVICCR VSPLQKAMVV KLVKKYQKES ILLAIGDGAN DVSMIQAAHI1020
 1021 GIGISGMEGL QAARSADVSI AQFRFLRKLL LVHGAWSYHR VAKTILFSFY KNIALYLTQF1080
 1081 WYVFQNVFSG EVIYESWTLS FYNVFYTVLP PLVLGILDQF VSARLLDRYP QLYRLGQTNS1140
 1141 FFRASVFTSW ILNAVYHSII LYLGGSAFYI YDGVQRDSFP AGKWVWGAAM YGAVLLTVLG1200
 1201 KAALVTNNWT KYHVIAIPGS MAIWVVFVAV YGTVAPMLNF SMEWFGVIPR LFTSPAFWLQ1260
 1261 MPTLAILALA RDFGWKFSKR LWKPEPYHHV QEIQKYNIQD YRPRMEQFQK AIRKVRQVQR1320
 1321 MRKQRGYAFS QADESQTRVL QAYDTTQHRG RYGEMASSRP Q

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle