YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88183558, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIWDALTGR KSSSQTSSSS APAAPPAPEH HTPTNTFQPT TTFDPTSAQG VEAFLGSSSF  60
   61 ADPSQLHPLA GLNKDTLDYL SLEDSALSDL PGSQSALPSR GFTDDLCYGT GTTYLAGLSL 120
  121 GGAWGLQEGL RKSAGESPKL RLNSVLNSIT RRGPFLGNSA GVVAVCYNCI NSYIGYLRGK 180
  181 NDAANTIVAG ALSGMLFKST RGLRPMAISG GIVASVAGAW AIVRRTIFHD SKNSHTETLA 240
  241 TL

Type	Start	End	Confidence
Cytoplasmic	1	201	0.60
Transmembrane Helix	202	223	0.84
Non-Cytoplasmic	224	242	0.47