YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88184268, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	272	0.78
Transmembrane Helix	273	295	0.88
Cytoplasmic	296	557	0.84
Transmembrane Helix	558	580	0.91
Non-Cytoplasmic	581	586	0.66
Transmembrane Helix	587	605	0.60
Cytoplasmic	606	611	0.47
Transmembrane Helix	612	632	0.74
Non-Cytoplasmic	633	649	0.42
Transmembrane Helix	650	664	0.57
Cytoplasmic	665	688	0.57
Transmembrane Helix	689	707	0.85
Non-Cytoplasmic	708	718	0.52
Transmembrane Helix	719	737	0.50
Cytoplasmic	738	743	0.43
Transmembrane Helix	744	763	0.56
Non-Cytoplasmic	764	775	0.72
Transmembrane Helix	776	794	0.95
Cytoplasmic	795	825	0.82
Transmembrane Helix	826	848	0.79
Non-Cytoplasmic	849	872	0.85
Transmembrane Helix	873	893	0.91
Cytoplasmic	894	932	0.97
Transmembrane Helix	933	956	0.89
Non-Cytoplasmic	957	977	0.84
Transmembrane Helix	978	997	0.67
Cytoplasmic	998	1162	0.85
Transmembrane Helix	1163	1187	0.89
Non-Cytoplasmic	1188	1204	0.80
Transmembrane Helix	1205	1225	0.92
Cytoplasmic	1226	1261	0.84
Transmembrane Helix	1262	1286	0.88
Non-Cytoplasmic	1287	1365	0.96
Transmembrane Helix	1366	1389	0.88
Cytoplasmic	1390	1583	0.99
Transmembrane Helix	1584	1604	0.92
Non-Cytoplasmic	1605	1616	0.81
Transmembrane Helix	1617	1643	0.83
Cytoplasmic	1644	1656	0.94
Transmembrane Helix	1657	1679	0.89
Non-Cytoplasmic	1680	1698	0.88
Transmembrane Helix	1699	1719	0.92
Cytoplasmic	1720	1730	0.82
Transmembrane Helix	1731	1751	0.92
Non-Cytoplasmic	1752	1759	0.83
Transmembrane Helix	1760	1782	0.92
Cytoplasmic	1783	1800	0.90
Transmembrane Helix	1801	1821	0.93
Non-Cytoplasmic	1822	1844	0.85
Transmembrane Helix	1845	1868	0.85
Cytoplasmic	1869	1876	0.86
Transmembrane Helix	1877	1898	0.94
Non-Cytoplasmic	1899	1904	0.83
Transmembrane Helix	1905	1927	0.89
Cytoplasmic	1928	1948	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNGVPMQQP PDPTLDAVTG GLPLDRFPEP FPAPAPDPPV YHKGRRRKSS STSSRRAEPP  60
   61 DSQLPEPDTC RDMSRGRAPA EEPLFFPCKC SGSIKHVHPG LPDGVVVALA KRSIASCARL 120
  121 RSASRSSTTP TCPRPSRPMS WSGHHRQIRV APTCVTLDEG QLWLRTSGGL ISGCRYYHAY 180
  181 RVRTAILKST TKGLGSRSAV LVTTGDGFGV CEAFNGTDVC PSSVLLRRQP HRQVHGNASA 240
  241 FSRLPDPIPQ SLLGGVGFLQ NLTRHTYFNR FVIHVLEGLI ITVLVIVCFI LIILVRDYVV 300
  301 QQQPERNLRA AWAAVENPQP PPVVLVRPQV QPQEILRHAA IEADDTAIQA IEAVEAIEAD 360
  361 DTANEADDEE EPALRPPPQR QLVVPLGVPP LPRDQGEAGP VFNMEAAHEY LDVFREARGD 420
  421 PQEIMRIARE RGLDDRMDYW VQITARSTSH LSATPTLAPV PAPVRRAPAG IVGRVADFMW 480
  481 GRVDALEEAD LAPVNFRGDF AEDDPDDGHG NAPANPAGQA GEGAEAAAAA GLDAEALEDA 540
  541 EDLEGILELV GMRGLLIGLF QNAIFCACLV TFTIFLAIFI PYNIGRVSIW ALANPMQIAS 600
  601 ILFSLSKLVQ DCALLVGGVA SSALSEVVHL LSRALMLPSV AEHSMGVSNT SWAMAVGAAN 660
  661 RIGGNFVTEW PFSSTSEVRN FSAISHASLF TLKGYVAAGF SGLWGLLDFV FGGDYATKGA 720
  721 AASALATETF PVVWQYVRAL PAAVFTPSTW VLNINLPVTA IATNAELAHW GGADRFWAIL 780
  781 MGYVAMFLMA ALYMRRGVPF STSQAGQRWE TYLMDWLNQA SGVVKVILII SIEMLVFPLY 840
  841 CGMLLNIALL PLFEQTTLKS RLLFTLHYPV TSIFVHWFIG TGYMFHFALF VSMCRKIMRK 900
  901 GVLYFIRDPD DPDFHPVRDV LDRNVTTQLR KILFSAFVYG ALVVVCLGGV VWGLSLSLPV 960
  961 LPIHTSSNEP VLEFPIDLLF YNFLMPYAVR LFRPSHWLHA MYRWWFRRCA RALRITWFLF1020
 1021 GERRIDEEGQ LALAPDSPDR SLPAWRQWFL EVDADGRVVV RSWHGILDGD TAKRPVVKSE1080
 1081 HIAKYNAKKE TLVRSNQLIT DGRFVRTPAS DQVKIPKGAG VFLAVNENNT RQDGVWDRPQ1140
 1141 NDIYSSDQYQ LVYLPPNFGI RIFLFILFIW AFAAATGVAI TIVPLVFGRW MFRTMIPSHV1200
 1201 RANDIYAFSI GIYVLGSAVY ALSHVPTAYR TARAHIAATM VAGRGHHTFW QTRDAILHAV1260
 1261 RILYTYFFIL LVAPLIVASL MELYALMPLN ELMYGVVLKP EFRKSPRRRH RQGRNPGAHS1320
 1321 AGRSDLDLAR LAIAKGFADF VMKGPGMVPA HGPPDQALYN ACAVLIYRMS FFVVALAIGS1380
 1381 CFALWSAVSM CHRWQVRIRD EAYLIGERLH NFGAANAPRP RNASGGSGMG GCPRTESTPK1440
 1441 SCVRCDPRAP ALPGRQGILS GPSNDAATCL INLGLPSSLP DYPPHPQGGE RGFLSRQPSF1500
 1501 GETPSSSGRS STEYNGSHLG DIEKSLPIQT IPSLRLEVLQ SITRSHHGDH DKSTEPRCVE1560
 1561 VNSKADEPAD EATRPKLGIR QRLAHFTWAW YTLTMSTGGL ALLIRSQPHQ FPGLHQIGLA1620
 1621 VFIINIALFV LVTSALVARF CLFPGTFLRS VTHPREGFFF PTFFLSIATL ITCTQRYCVP1680
 1681 DDPEVARATS KSLMWAIQIA FWVYVAVTTS VAVGQYSYVF SAHSFGLQTM MPTWILPIFP1740
 1741 IMLSGTIASV ISETQPEASG VSIAVAGLTC QGLGIAVAFM MYSHMVGRLM QSGLPNREHR1800
 1801 TGLFMCVGPP AFTALAFLGM GRSLPETFDH DMDGLTDAAT IETMGLIGAG FLWALSFWWF1860
 1861 GIALLAVIQS PPRYFHLGWW AAVFPNTGFT LATISIGTAF RNEPILWFAT AMSIVLLLTY1920
 1921 LFVLCHHIRA VVVQDIMYPG RDEDVEDH