YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88184701, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.58
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	26	0.58
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	66	0.98
Transmembrane Helix	67	89	0.92
Cytoplasmic	90	97	0.81
Transmembrane Helix	98	118	0.94
Non-Cytoplasmic	119	133	0.88
Transmembrane Helix	134	157	0.90
Cytoplasmic	158	284	0.99
Transmembrane Helix	285	309	0.84
Non-Cytoplasmic	310	324	0.78
Transmembrane Helix	325	341	0.91
Cytoplasmic	342	361	0.76
Transmembrane Helix	362	382	0.84
Non-Cytoplasmic	383	396	0.80
Transmembrane Helix	397	416	0.90
Cytoplasmic	417	480	0.95
Transmembrane Helix	481	500	0.87
Non-Cytoplasmic	501	512	0.79
Transmembrane Helix	513	533	0.90
Cytoplasmic	534	547	0.85
Transmembrane Helix	548	566	0.95
Non-Cytoplasmic	567	580	0.83
Transmembrane Helix	581	603	0.88
Cytoplasmic	604	615	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAPVTSILP VLASVAILGL IPVALADGDG GHGHDHGGGM EMTEADKPLP EDQYPPTYFA  60
   61 HPDNKAAIYG HIALMVVGWV FALPAAVMLS LARSRYTLLV QFAFLAINAG GLLLGVIYNA 120
  121 STPDLYPNNA HHKLGWIVTS VVGAQVAVGV LARVAGVLKR EKFKLASRAE ERQGFIPVST 180
  181 AAMAEHESRY SLSGPYGRFS NDSGQGTEPK TESLRSHSLS SGADSPPSPI HDTHRDYHHD 240
  241 DDSDEDLEAR LPMFSKSTKA HSIVAKIAGK ISDRFWKVLL FAYNFVDRTI LILSFIALCT 300
  301 GIITFGRFFE GHGIFSGLAH WIKGGVFVWL GIFTLGRWAG SFGELGWAWN IRPRKAGQKW 360
  361 RPSAEFVESA VIFFYGSTNI FLEHLGNWGG EWSATDLEHM SITVLFIGGG LCGMLIESTK 420
  421 IRNLLNYTVT EAIQTSPQPP TTIINSRHTY TIPHDNDPER NNNHYQDPTE HAEPESYGFS 480
  481 TNPFPALVIV LLGIMMSSHT QGSMVSSMVH KQWGNLLTGA SMARALTYVL VWLRPPRSVL 540
  541 PSRPPTELLA AFGMTAGGVI FMASAGDTID GMIHYQLDAM FMYTVTMGLV GLLMAWVIVM 600
  601 IALKGWAARR EAGRA