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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|116181486, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.42
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSSQLREEG GSTDGMADEP ELSRADDQDS SSMSDQETVK GNRDEDHIAD ILEEEGNTGI  60
   61 ESSALPAGPS SIAHRYRELL QVEHETPSED GSTDAIPRRF RDLLPRQQPT PLSRLSPWHS 120
  121 QSYAFLPTIR PKIPVPYHLA IPLLAKTLVP RVPIHPQPER IDEQPVATRP RGHRNTITTM 180
  181 GGSVESGPIT AIAISADHTT IAGGHANGNI FTWDTSRAAG RPFLSIPHLD PMHQTSKSAD 240
  241 GHVLNVKVTH LGFLGTRHTA LVSADDRGMA FSHLATRGTG ALGRTVKTTR ILGRYPDAKP 300
  301 PPGKTLKPST VLAFASLPLG NVEMATDGLG LTAMLTPYLL VIVSTTPIAQ TQHKSARPKE 360
  361 VVAHSALTGC LAWFPGVKLK VADPVTGSQI SKVKLVYCWS NVLTVLDVDE IPSEDKDKPP 420
  421 SLRFRARSRW KCEEAIVAVQ WLSRSVLTVL TISQRLIVLE DRSMRMTEAF DLIHKHIYHV 480
  481 DLFSKQLNTL VEQLDEEDPS MHGVVADAFY MSFKTYKGRL FLLGLNDISI GALSNWADRL 540
  541 IALMENGDYV GAITLATSYY MGDANKLTVG LPEDTKLRHS MVQDRLMEIM RASLKYAFGQ 600
  601 RQKNRESTDD HHFQELSETC FVACLSVGDI DFLFDEMYEW YEEAGVEGIF LEALEPYILD 660
  661 GSITAVPPVV VKALITHFVT KSWESRLEEM ICHMDTATLD LDQITLLCKQ HGLYDALLYV 720
  721 WNQALSDFVT PLFDLLSLLV PLMQNGQASG SQMDAEIYGV NALKIFPYLS YVLTGRVYPT 780
  781 GDALPEDVAQ QAKAELYWLL FSGKSITWPK GSNKRLLTRP NRSEEPSFPY LRLVLNFDAA 840
  841 SFLSALNEAF EDSFLNDSPE KSGGSAGRDL PEEQIFGMTV NRQYIVSILM EIMNSSDFTP 900
  901 NETIYLDMFI ARNLPKYPQY LLFPGSTLTK VLVGLCKYPG QDLAEDAQLS AEYLLSVYQP 960
  961 PDVTELIPLF KEASFYRILK RIYRGDKQYG KLIHTYFEDP EDQEDVFNCI DLYLRPQAEP1020
 1021 EKETTLGRST DRDLVEQYLR LMCQFDPDRV SDYVGLVQSS NLRLEQLLPT MEETGVIDAA1080
 1081 VILMAKDGQI QEAMGRLVKH LETLESALQG LLAGSRDDAR GVQASAEDLV QGLRKFVLEP1140
 1141 LSPTNGDPHH PPPLDTNKLL ALLRGLVQTT FTALLNSTST STTTKTTTTT TRTTTTATTT1200
 1201 AGLGTNLAFL RILRAFLTRA AAASPSLADL RAVLASVFSA YAYEESILRL SNRLLDRSLF1260
 1261 VSVARAVELR QRGWRPRGSM CEACARRVWG PGVQGGRGVY EAWEAAEERR RRVGRVGRGL1320
 1321 GGGVSGAGAG GGGGGAAAAA TVGAVREEQD EEEIAGIFTI RARLEALLAE GWRKDKESGV1380
 1381 PVSYWMGRVD GGGWFSYNTT HVNGSTMPVI TEEEVDEDVV RIPALNGNRP FARQDSSGSS1440
 1441 NLNPDHDPNS TDEHLPNEDD EEEQSYSSAS GSESEDDDDD YDDDDDDNDD NNNPRRRRPP1500
 1501 QPPFTQHTFA PPFYGRPPTP LPPSPSLTSL LRPSRPTTPD ASDDDGHGHG HGHNNGGAGT1560
 1561 STTAGGGGGG GGNGHLGEPV PRARPKVPTY EYYGFVLYLF SSLFFLVYLL WSYLPSPFLH1620
 1621 ALGIYYYPNR WWSLAIPSFL VMLLVYIYVA LAGYNLEILT LPLESVETVV DEAAMVAVVD1680
 1681 SKGRIVRGEK KRREGGGRRR RGTVTKDGGA SGSGSGAGPG EGVKLNWREV WNEGTDAVMD1740
 1741 VPLAGVCEVL YGEGRDWDSE LEDEDVGITR I

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