YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88185957, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVIPKEVEQ EHYGVVVRGG IIGGTAGLAV GLAGVVLGAR RYPAIRQLTL PFRSFLVSSA  60
   61 GTFGAMVVAE RYSINYQRSH DAMNNYLEEA HRVEAEARRA QRTDAQRFMD WGRENRYSIV 120
  121 FVSWAASMGI AMAIVGRSKY LTGSQKLVQA RMYAQGLTLA VLIATAAFET ADAKSGKGRW 180
  181 ETVMVVDPDD PTHQIEKKIH KEEYEGQDLW KQMVASEEKR LGEQKKQRDA AGKA

Type	Start	End	Confidence
Cytoplasmic	1	14	0.52
Transmembrane Helix	15	39	0.84
Non-Cytoplasmic	40	48	0.47
Transmembrane Helix	49	69	0.79
Cytoplasmic	70	116	0.59
Transmembrane Helix	117	136	0.93
Non-Cytoplasmic	137	151	0.54
Transmembrane Helix	152	171	0.65
Cytoplasmic	172	234	0.67