YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77174716, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSTENLQL AKRGPIISII AYITLAVAKL AAGYWFDATS LVADGFNNLS DILGNVALLI  60
   61 GLHLASQPAD SNHRFGHWKI EDLASLITSF IMFVVGIQVF IQTVTKIINN TDTNIDPLGA 120
  121 IVGAISALVM LGVYLYNKQL SQRVKSSALV AASKDNLSDA VTSIGTSIAI IAASLNFPII 180
  181 DRLAAIIITY FILKTAYDIF IESAFSLSDG FDDYQLKQYE KAILTIPKIS AVKSQRGRTY 240
  241 GSNIYLDIVL EMNPDLSVFE SHAITERVEK LLSDKFSVYD IDIHVEPASI PEDEIFDNVY 300
  301 QKLYKNEKII LAKIPGYETF ISPDFYMINE KGNIITSDML TNATNHSLAS NFKYFNVKSI 360
  361 SQKTKLVSYE LEGKRHTSIW RRNEKWFLIY HQITAKSSPY KTRRYQITSL D

Type	Start	End	Confidence
Cytoplasmic	1	15	0.88
Transmembrane Helix	16	36	0.89
Non-Cytoplasmic	37	48	0.76
Transmembrane Helix	49	66	0.86
Cytoplasmic	67	82	0.82
Transmembrane Helix	83	104	0.89
Non-Cytoplasmic	105	116	0.80
Transmembrane Helix	117	136	0.95
Cytoplasmic	137	156	0.88
Transmembrane Helix	157	179	0.56
Non-Cytoplasmic	180	411	0.66