YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77412605, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TENLQLAKRG PIISIIAYIT LAVAKLAAGY WFDATSLVAD GFNNLSDILG NVALLIGLHL  60
   61 ASQPADSNHR FGHWKIEDLA SLITSFIMFV VGIQVFIQTV TKIINNTDTN IDPLGAIVGA 120
  121 ISALVMLGVY LYNKQLSQRV KSSALVAASK DNLSDAVTSI GTSIAIIAAS LNFPIIDRLA 180
  181 AIIITYFILK TAYDIFIESA FSLSDGFDDY QLKQYEKAIL TIPKISAVKS QRGRTYGSNI 240
  241 YLDIVLEMNP DLSVFESHAI TERVEKLLSD KFSVYDIDIH VEPASIPEDE IFDNVYQKLY 300
  301 KNEKIILAKI PGYETFISPD FYMINEKGNI ITSDMLTNAT NHSLASNFKY FNVKSISQKT 360
  361 KLVSYELEGK RHTSIWRRNE KWFLIYHQIT AKSSPYKTRR YQITSLD

Type	Start	End	Confidence
Cytoplasmic	1	11	0.88
Transmembrane Helix	12	32	0.90
Non-Cytoplasmic	33	44	0.75
Transmembrane Helix	45	62	0.86
Cytoplasmic	63	78	0.82
Transmembrane Helix	79	100	0.89
Non-Cytoplasmic	101	112	0.80
Transmembrane Helix	113	132	0.95
Cytoplasmic	133	152	0.88
Transmembrane Helix	153	175	0.56
Non-Cytoplasmic	176	407	0.66