YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77159077, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ENLHCKKRGP IISIIAYITL AVAKLATGYW FDATSLVADG FNNLSDILGN VALLIGLHLA  60
   61 SQPADSNHRF GHWKIEDLAS LITSFIMFVV GIQVFIQTVT KIINNTDTNI DPLGAIVGAI 120
  121 SALVMLGVYF YNKQLSQRVK SSALVAASKD NLSDAVTSIG TSIAIIAASL NFPIIDRLAA 180
  181 IIITYFILKT AYDIFIESAF SLSDGFDDYQ LKQYEKAILT IPKISAVKSQ RGRTYGSNIY 240
  241 LDIVLEMNPD LSVFESHAIT ERVEKLLSDK FSVYDIDIHV EPASIPEDEI FDNVYQKLYK 300
  301 NEKIILAKIP GYETFISPDF YMINEKGNII TSDMLTNATN HSLASNFKYF NVKSISQKTK 360
  361 LVSYELEGKR HTSIWRRNEK WFLIYHQITA KSSPYKTRRY QITSLD

Type	Start	End	Confidence
Cytoplasmic	1	10	0.89
Transmembrane Helix	11	31	0.89
Non-Cytoplasmic	32	43	0.75
Transmembrane Helix	44	61	0.85
Cytoplasmic	62	77	0.82
Transmembrane Helix	78	99	0.89
Non-Cytoplasmic	100	111	0.80
Transmembrane Helix	112	131	0.95
Cytoplasmic	132	151	0.88
Transmembrane Helix	152	174	0.56
Non-Cytoplasmic	175	406	0.66