YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|152959095, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEDSDQEKS EEPTASKLEK AREKGQIPRS RELTSMLMLG AGLTILWMSG ESMARQLSAM  60
   61 VAQGLHFDHS MVSNDKQMLR QIGMLLRQTL LAMLPIFAGL VIVALAVPML LGGVLFSGES 120
  121 IKFDLKRMSP IAGLKRMFSS QALAELLKAI LKATLVGWVT GLFLWHNWPD MMRLIAAPPV 180
  181 AALGDALHLI IFCGLVVVLG LLPMVGFDVF YQITSHIKKL RMTKQDIRDE FKNQEGDPHV 240
  241 KGRIRQQQRA MARRRMMVDV PKADVIVTNP THYAVALQYN ESKMSAPKVL AKGAGAVALR 300
  301 IRELGAEHRI PLLEAPPLAR ALFRHSEVGQ HIPATLYAAV AEVLAWVYQL KRWKREGGLI 360
  361 PKKPEHLPVP EALDFATESE IKSETD

Type	Start	End	Confidence
Cytoplasmic	1	32	0.95
Transmembrane Helix	33	50	0.91
Non-Cytoplasmic	51	92	0.88
Transmembrane Helix	93	118	0.88
Cytoplasmic	119	145	0.89
Transmembrane Helix	146	166	0.89
Non-Cytoplasmic	167	186	0.87
Transmembrane Helix	187	211	0.92
Cytoplasmic	212	386	0.91