YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91683142, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAQAQKPRS PATGSAASAG MSETALKRID DHLKRVYVDP GRFAGAQTLV YRRGQIVYQS  60
   61 SLGYADRERK APIKDDTIFR IYSMTKPITS VALMMLFEEG RIQLDDPVAK YIPEWANLGV 120
  121 FQAGIAPAFL TRPPARPMQI VDLLRHTSGL TYGFQNRTNV DAAYRDKGIG AFEKAGTLDC 180
  181 WIADLAKIPL EFSPGEAWNY SVSTDVLGYI IQKISGMPFE QFVRQRILDP LGMTDTDFFV 240
  241 PEAKAHRLAA CYSADGEGGM TLQDDPATSS FLAPPDLISG GGGLVSTTAD YLAFCRALLN 300
  301 GGELGGVRLI GPKTLRLMTT NHLPGNRDLT EMSRSMFSEA TNAGIGFGLG FAVNMNPAST 360
  361 LLPGSVGEYY WGGAASTAFW IDPAEDLITI FMTQLLPSSS YPIRRELRAL VYGAITESNL 420
  421

Type	Start	End	Confidence
Signal Peptide	1	24	0.45
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	420	0.88