YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|69159248, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.75
Transmembrane Helix	5	23	0.92
Cytoplasmic	24	30	0.65
Transmembrane Helix	31	50	0.79
Non-Cytoplasmic	51	56	0.75
Transmembrane Helix	57	75	0.93
Cytoplasmic	76	84	0.78
Transmembrane Helix	85	106	0.93
Non-Cytoplasmic	107	111	0.83
Transmembrane Helix	112	133	0.93
Cytoplasmic	134	145	0.93
Transmembrane Helix	146	168	0.87
Non-Cytoplasmic	169	179	0.84
Transmembrane Helix	180	202	0.88
Cytoplasmic	203	213	0.88
Transmembrane Helix	214	232	0.89
Non-Cytoplasmic	233	237	0.57
Transmembrane Helix	238	256	0.87
Cytoplasmic	257	266	0.85
Transmembrane Helix	267	288	0.85
Non-Cytoplasmic	289	294	0.69
Transmembrane Helix	295	314	0.95
Cytoplasmic	315	324	0.81
Transmembrane Helix	325	346	0.90
Non-Cytoplasmic	347	354	0.76
Transmembrane Helix	355	374	0.95
Cytoplasmic	375	649	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDHSIFIQIL SMLVIAIIAI ALLRRIGLPP ILAYLLTGVL SGPSGFHWFT QLQMQSVAEL  60
   61 GVVLLMFTLG LEFSVPRLWA MRRTVFGLGS AQMIVTAVLA GGTALLLGQD GVAALVIGAA 120
  121 VALSSTAIVL KLLNEQGWLR RRHGELSVSV LLFQDLAVVP LLIVLPLLSN DGAPIGSADI 180
  181 AWGLLKGILA FIGLMSFGKW VLPRIFDEVA RSRSNELFVL STLVVALVTG AFTQWLGLSM 240
  241 ALGAFIAGML LGESQYRRQL EADIRPFRDL LMGLFFISIG MLLDFGLVMQ FWWQIILILL 300
  301 AVVLTKAGVV YGLLKLAGEP FKIAMSTAIS LAQVGEFSFV LLALAVNYHL LENQVSTILV 360
  361 MVAVLSMSVA PWLVRNSQKI AKKMQGNYKG GQEMLPENLP HSDSQELVLI LGYGRVGQTI 420
  421 ARFLKTEAVP YIVLDLDPTR VSEARAAAEP VYFGDACKLG ILKQIGIRQA NMVVLTFCEP 480
  481 RQSEESLALC RKLAPDAKIL VRTRDDSDLT ELKAAGATQV IPETLEGSLM LVSQVLYQCG 540
  541 VPLARILKRL ESERRNHYQY LHGFFSGTET DFTLDLLHAV TLTSSASAVG KTLADIPWIS 600
  601 LEVELRAVRR KGAEYDNPAS DWQLKRNDIL LLVGKTHHID KAEEYLLQG