YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68544551, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	47	0.88
Transmembrane Helix	48	69	0.89
Non-Cytoplasmic	70	76	0.80
Transmembrane Helix	77	101	0.82
Cytoplasmic	102	108	0.71
Transmembrane Helix	109	132	0.89
Non-Cytoplasmic	133	161	0.82
Transmembrane Helix	162	182	0.92
Cytoplasmic	183	191	0.77
Transmembrane Helix	192	212	0.85
Non-Cytoplasmic	213	222	0.80
Transmembrane Helix	223	243	0.94
Cytoplasmic	244	255	0.90
Transmembrane Helix	256	279	0.88
Non-Cytoplasmic	280	337	0.83
Transmembrane Helix	338	360	0.83
Cytoplasmic	361	380	0.83
Transmembrane Helix	381	401	0.95
Non-Cytoplasmic	402	436	0.75
Transmembrane Helix	437	458	0.91
Cytoplasmic	459	475	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCCYVAAAP SYNISHQGWC KVVQWHPSVT AIEHKANPGK KLIGAPPFIL SVSFALLIIL  60
   61 GTCLLKLPIA TESSITWLQS LFTATSAVTV TGLVVVDTGT VFTPFGQIVI ALLIQCGGLG 120
  121 LMTFAIVTLI ALGGKIGFLQ QTVAKEAFNQ TDTSTLVSTA KAVFVFSLLV EAVGMLILSV 180
  181 HWSHELGWQT SLFHGFFYTI SAFNNAGFAL SADSLMPYVA DPVINLTITG LFIIGGLGFS 240
  241 VWIDLRRNKR WSKLSVYSRM MITGTIIINA VAVIAIYFIE YNNPNTLAPL SELGKWLASW 300
  301 FQAVTPRTAG FNTLAIDQLE DASTLLILVL MFIGGGSLST ASGIKVVTFM VLILATYGYL 360
  361 RRDEAIYVFK REIPKDTVSK ALALTIISLV VSWLAIFILV LSEKAPLIDI VFEAISALGT 420
  421 VGLSRGLTGN LTSLGQAIII FMMFMGRLGP LMLAYFLANP RVKKLRYAET KLAIG