YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77814410, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	44	0.91
Non-Cytoplasmic	45	55	0.79
Transmembrane Helix	56	80	0.82
Cytoplasmic	81	87	0.73
Transmembrane Helix	88	111	0.89
Non-Cytoplasmic	112	140	0.85
Transmembrane Helix	141	161	0.92
Cytoplasmic	162	170	0.80
Transmembrane Helix	171	191	0.87
Non-Cytoplasmic	192	201	0.80
Transmembrane Helix	202	222	0.94
Cytoplasmic	223	234	0.90
Transmembrane Helix	235	258	0.88
Non-Cytoplasmic	259	314	0.88
Transmembrane Helix	315	339	0.83
Cytoplasmic	340	359	0.89
Transmembrane Helix	360	380	0.95
Non-Cytoplasmic	381	414	0.81
Transmembrane Helix	415	436	0.89
Cytoplasmic	437	454	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQWHPSIMA IEHHPRSDRK LFGAPPFILS VSFALLIILG TCLLKLPIAT EAPITWLQSL  60
   61 FTATSAVTVT GLVVVDTGTV FTPFGQIVIA LLIQCGGLGL MTFAIVTLIA LGGKIGFLQQ 120
  121 TVAKEAFNQT DTSTLVSTAK AVLLFSLLVE AIGMLILSVH WSNELGWQTS LFHGFFYTIS 180
  181 AFNNAGFALS ADSLMPYVAD PVINLTITGL FIIGGLGFSV WIDLRRNKCW SKLTVYSRMM 240
  241 ITGTILINAV AVIAIYLIEY NNPNTLAPLS ELGKWLASWF QAVTPRTAGF NTLAIDQLED 300
  301 GSTLLMLVLM FIGGGSLSTA SGIKVVTFMV LILATYGYLR RDEAVYVFKR EIPKDTISKA 360
  361 LALTMISIGV TWLAIFALVL TEKAPLVDIV FEAVSALGTV GLSRGLTGSL SDMGLGIIIF 420
  421 MMYMGRLGPL MLAYFLANPR VKKLRYAETK LAIG