YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68546933, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADLKAKLEL PGNDSIELPV KQGTEGFDVI DISKLGSKGY FTFDPGFLAT ASCESAITYI  60
   61 DGDKGILLHR GYPIEQLAVE SNYLELCYAL LYGELPTKAQ YEQFAHTVKS HTMVHEQLAF 120
  121 FFRGFRRDAH PMAMLCGVTG ALSAFYQDSL DVNDARHREI AAYRLVSKMP TLAAMCYKYS 180
  181 IGQPFVYPRN DLSYAGNFLS MMFAVPCEEY KVNPIIERAM DRIFILHADH EQNASTSTVR 240
  241 LAGSSGANPF ACIAAGIASL WGPAHGGANE ACLRMLEEIG TVDRIPEFID RAKDKNDPFR 300
  301 LMGFGHRVYK NFDPRAKVMR ETCHEVLSEL KVNDPLLDVA MELERIALND EYFISKKLYP 360
  361 NVDFYSGIIM KAIGIPTSMF TVIFALARTV GWISHWKEML DQPGHKISRP RQLYTGEHSR 420
  421 DFVSVDKR

Type	Start	End	Confidence
Non-Cytoplasmic	1	367	0.67
Transmembrane Helix	368	390	0.67
Cytoplasmic	391	428	0.60