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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|120598068, gi...
Protein type: Transmembrane
Type Confidence: 0.89
Topology Confidence: 0.48
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPVNNMTKY SLRSWVLVLA LAPTILVGLL LGSYFTINRF YELEDTLIEQ GSNIIEPLAI  60
   61 ASEVGLIGND REATKRLLAA AQLNKSTLVK SIAIFDIQNQ LFVTSHYHKD FEMMRYKEAL 120
  121 TNLHKTEIEH VGDSLILRTP IFASTPSATL ANVDIQTDNG ELLGYISVII NKERALLEQH 180
  181 RAAVAAFIMV LLGVQLNLLF TFRLVKNVTQ PITEMVRVVA KIREGKLDAR LDGNLIGELD 240
  241 LLKRGINAMA CSLSEYHDEM QQNIDQATSD LRETLEQIEI QNVELDLAKK RALEASRIKS 300
  301 EFLANMSHEL RTPLNGVIGF ARQLVKTPLH SSQVDYINTI ERSATNLLAI INDILDFSKL 360
  361 EAGKMVLENM PFGLRETLGD TMTLISGSAQ AKGLELVVDI APNVPDHVNG DAMRVCQIIN 420
  421 NLVGNAIKFT DSGSVLVKLE LQSQSEEQVI LRCDVIDTGI GIDESQQDFL FQAFGQADSS 480
  481 ISRRFGGTGL GLVITKRLVN QMGGQIGFTS SVDKGSNFWF TLPLGLGQFQ IGDSLPLEKL 540
  541 KDKTILFYEP RVLTHAVLSR QLRLWDTKVT HHQHIPNLLT TLANTEEAYD YILLSCHGFT 600
  601 DATQLVGTLN LAKTKTDCLV VLYDCQEQDA LSKFIRPNAD VVLSLPVSEH QLARNMLYPP 660
  661 LEYDIQAPIT ISAPAARQSL TVLAVDDNFA NLKLIDTLLN ELVTTVIAVN NGDEAVKQAK 720
  721 TRTFDLIFMD IQMPGTDGIS ATKQIRQGSM NRNTPIIAVT AHAIAEEREL ILGSGMDGYL 780
  781 PKPIDEAALK DVIHRWITRP KFTHFDLHTL NWDLCLTQAN HKSNLALEML KMLLDSLPET 840
  841 VEKIQTALGQ NDQATMLSTI HKLHGASCYC GVPTTQRLCQ EIESALKRQT PVEDLEPEIL 900
  901 ELLDELTKVE SAVKQVLSQL SAEITDDQKN GLL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle