YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|120599347, gi...
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.29
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.29
Transmembrane Helix	8	38	0.51
Cytoplasmic	39	40	0.27
Transmembrane Helix	41	61	0.66
Non-Cytoplasmic	62	215	0.62
Transmembrane Helix	216	243	0.80
Cytoplasmic	244	253	0.67
Transmembrane Helix	254	273	0.90
Non-Cytoplasmic	274	278	0.57
Transmembrane Helix	279	298	0.83
Cytoplasmic	299	305	0.73
Transmembrane Helix	306	337	0.77
Non-Cytoplasmic	338	371	0.78
Transmembrane Helix	372	394	0.87
Cytoplasmic	395	400	0.65
Transmembrane Helix	401	426	0.82
Non-Cytoplasmic	427	456	0.71
Transmembrane Helix	457	479	0.86
Cytoplasmic	480	485	0.87
Transmembrane Helix	486	508	0.90
Non-Cytoplasmic	509	774	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRFILGFSA SLLSAMLWPS LPPVAYLPYL LVGALILYQK APLCSGVLFA MLWLTVFCLG  60
   61 LSRQDLPVQQ QPLQVRGEII SLVSQNSDWL SLDIAIIKPN LILRPRAKLR LTWKAPPDVA 120
  121 VGQVWLFTIT PKSVSNVLNQ GGYNEQKQLI SQHIVGKGRV IKAELIESQP SLRNQLVSAL 180
  181 APQLAPLQQG DLLLALILGD KQLISSERWQ MLRQTATGHL VAISGLHLSV VTAWIYAVMI 240
  241 FGLTRFVPHP SRRNWVFALL LSGIGAAFYA YLAGFGISTQ RALVMILLLM LLSLLKRFSS 300
  301 PWERLLFALF MVLLIDPLAC LSAGFWLSFC ALAIILYTLE AAPKVHQLTN DITPLGRVRA 360
  361 GLLQFWSIQW RLSLGLGFVQ AVLFGGISAH SLWINMLAVP WFSFVVIPIA MAGFVCWWIG 420
  421 TALGFSWMGL LELSNWALMP YGQLLAISGQ LPIHWQVVSE SVLALALCGL LGGVLWRYIP 480
  481 KQRLYWPWRF IVSLLFVPFL LSFLLKWLPL KSATWSMHLL DVGQGLAVVI EKEGRGLIYD 540
  541 TGAAFGESFS YSQRVIIPFL NAKGIREIDY VFISHSDNDH AGGASALLAA YPKAQWITDV 600
  601 TEIAGKGCRP QQINWQDLKI SIIFPQKPIA GNNGSCVVRI DDTQQRVLLT GDIEKNSEMK 660
  661 LLTQVKMQPT ILMSQVLIAP HHGSKSSSTE AFIDAVSPEF VLFPAGLGNR YGFPKPVVVD 720
  721 RYQARNIPHL TTGIEGQISV IFRHDGREVK TYRRDLAPFW YNRLFRFGDL INPE