YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119773389, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.93
Transmembrane Helix	7	28	0.95
Cytoplasmic	29	39	0.85
Transmembrane Helix	40	62	0.92
Non-Cytoplasmic	63	88	0.92
Transmembrane Helix	89	110	0.84
Cytoplasmic	111	120	0.81
Transmembrane Helix	121	143	0.91
Non-Cytoplasmic	144	175	0.93
Transmembrane Helix	176	197	0.92
Cytoplasmic	198	209	0.87
Transmembrane Helix	210	231	0.92
Non-Cytoplasmic	232	246	0.91
Transmembrane Helix	247	264	0.95
Cytoplasmic	265	273	0.84
Transmembrane Helix	274	293	0.95
Non-Cytoplasmic	294	310	0.83
Transmembrane Helix	311	331	0.95
Cytoplasmic	332	350	0.93
Transmembrane Helix	351	374	0.92
Non-Cytoplasmic	375	391	0.87
Transmembrane Helix	392	411	0.95
Cytoplasmic	412	424	0.85
Transmembrane Helix	425	444	0.95
Non-Cytoplasmic	445	449	0.76
Transmembrane Helix	450	470	0.91
Cytoplasmic	471	490	0.85
Transmembrane Helix	491	511	0.92
Non-Cytoplasmic	512	613	0.95
Transmembrane Helix	614	633	0.91
Cytoplasmic	634	658	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPELGHFAL ITGLAFALLL SCVPLIGVAR KDQYLVRYAW PLAYGMFLFI ALSVVTLAYS  60
   61 FAVDDFSVAY VAHHSNSQLP SFFKIAAVWG GHEGSLLFWV FSLSVWAAAV AKFSKGLEEV 120
  121 FTARVLAVLG MITVGFTLFM LLTSSPFERL FPAPMEGRDL NPMLQDVGLI FHPPMLYLGY 180
  181 VGFSVSFAFA IAALLSGRLD SAWARWSRPW TLAAWIFLTG GIALGSWWAY YELGWGGWWF 240
  241 WDPVENASFM PWLIGTALVH SLIVTEKRGT FRNWTVLLSI FAFSLSLLGT FIVRSGVLTS 300
  301 VHSFAADPSR GMFILLLLGL AIGGSLTLFA FRASEMSSPA KFELWSKETM LLVCNLLLTV 360
  361 ACGTVLLGTL YPLLIDALGM GKISVGPPYF NAVFVPIILV MFVFMGIGPI IRWKKAKEGE 420
  421 VKRQLLIPAI VSAVVGIAVP FIAGGAFNAW VALGIGAAVW ITLATLRAGY NIVKTNEGLS 480
  481 LARMGRSQLG MIIAHLGIAV SVVGGTMVSN YSIEKSVRMG PGISHELAGY TFKFTETKNV 540
  541 VGPNYTAQQG QIEVYKGDKF LTLLKPDRRQ YNVRTMDMTE AGIDWGLFRD LYVTMGDPIS 600
  601 ATEYAVRLNY KPFVRWLWFG GIFMMVGGFF AASDKRYRVK AAASDKAKEA TKGNLATA