YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77808593, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.81
Transmembrane Helix	10	34	0.87
Non-Cytoplasmic	35	54	0.94
Transmembrane Helix	55	76	0.91
Cytoplasmic	77	86	0.87
Transmembrane Helix	87	108	0.92
Non-Cytoplasmic	109	113	0.81
Transmembrane Helix	114	132	0.95
Cytoplasmic	133	139	0.86
Transmembrane Helix	140	163	0.90
Non-Cytoplasmic	164	171	0.83
Transmembrane Helix	172	194	0.93
Cytoplasmic	195	213	0.90
Transmembrane Helix	214	235	0.91
Non-Cytoplasmic	236	240	0.80
Transmembrane Helix	241	261	0.87
Cytoplasmic	262	308	0.90
Transmembrane Helix	309	328	0.94
Non-Cytoplasmic	329	334	0.81
Transmembrane Helix	335	359	0.84
Cytoplasmic	360	367	0.67
Transmembrane Helix	368	387	0.87
Non-Cytoplasmic	388	393	0.59
Transmembrane Helix	394	416	0.74
Cytoplasmic	417	425	0.55
Transmembrane Helix	426	448	0.85
Non-Cytoplasmic	449	465	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIATLFTAL LVCMFLGMPI AIALGFSSML TILFFSNDSL ASIALKLYES SSEHYTLLAI  60
   61 PFFILSSAFL STGGVARRII DFAMDSIGHI RGGLAMASVM ACMLFAAVSG SSPATVAAIG 120
  121 SIVIVGMVKA GYPEKFAAGV ITTSGTLGIL IPPSIVMLVY AAATEVSAAR MFMAGLIPGL 180
  181 LMGLLLMVVI YIVARFKNLP SRPFPGIKQL GLSSAKALGG LALILIVLGS IYGGIASPTE 240
  241 ASAVACMYAY LIAVFGYRDI GPLKNVAWRN SGESLPNAIA RNLWHMILGL IKTPVDTEVR 300
  301 NVVRDGAKVS IMLLFIIANA MLFAHVLTTE RIPHIIAEYI VSMGLPAWGF LIIVNLLLLA 360
  361 AGNFMEPSAI VLIMAPILFP IATQLGIDPI HLGIIMVVNM EIGMLTPPVG LNLFVTSGIT 420
  421 GRSIGWVIHS VLPWLLLMLV FLAFITYVPQ ISLFLPEMLD KLRGY