YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|120324183, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	37	0.95
Transmembrane Helix	38	61	0.87
Cytoplasmic	62	74	0.84
Transmembrane Helix	75	96	0.87
Non-Cytoplasmic	97	127	0.86
Transmembrane Helix	128	146	0.91
Cytoplasmic	147	154	0.87
Transmembrane Helix	155	177	0.90
Non-Cytoplasmic	178	209	0.91
Transmembrane Helix	210	229	0.93
Cytoplasmic	230	244	0.82
Transmembrane Helix	245	265	0.92
Non-Cytoplasmic	266	280	0.88
Transmembrane Helix	281	298	0.94
Cytoplasmic	299	307	0.84
Transmembrane Helix	308	327	0.94
Non-Cytoplasmic	328	344	0.82
Transmembrane Helix	345	365	0.95
Cytoplasmic	366	384	0.92
Transmembrane Helix	385	408	0.91
Non-Cytoplasmic	409	422	0.88
Transmembrane Helix	423	444	0.88
Cytoplasmic	445	454	0.89
Transmembrane Helix	455	477	0.90
Non-Cytoplasmic	478	482	0.88
Transmembrane Helix	483	504	0.93
Cytoplasmic	505	523	0.93
Transmembrane Helix	524	544	0.94
Non-Cytoplasmic	545	649	0.98
Transmembrane Helix	650	669	0.95
Cytoplasmic	670	694	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWLADEAIPE KPSPIGSVIA EPATEHGPEM LTLTIPEVGL FALLIALCLS LLQATVPLLG  60
   61 AATRRPLWMA FAEPMAWGQF VFLLVSYASL TASFLLDDFS VDYVARNSNS MLPWYYKFTA 120
  121 VWGSHEGSVL LWSLILSGWG FAVSLFSRQL PRDMLARVLG VLGVVSAGFL LFIVVTSSPF 180
  181 DRLLPGMPAD GADLNPLLQD VGLIIHPPML YMGYVGFSVV FAFAIAALIE GRLDAAWTRW 240
  241 VRPWTNIAWA FLTLGIALGS WWAYYELGWG GWWFWDPVEN ASLLPWLSGT ALIHSLAVTE 300
  301 KRGTFKSWTA LLAIFTFSLS LLGTFLVRSG VLTSVHAFAN DPSRGLFILA LLGITVGVSL 360
  361 LIFALRAPRM SANAGFSWLS RDALLLINNI LLVIMTITVL MGTLYPLILD ALGLGKVSIG 420
  421 APYFNSLFVP LTVMLCAFMG LGPVSRWKQM PGRELFRRLL GAGLAALAIA VSIPFLYNGQ 480
  481 WNVAVALGMV AALWVVLGVV RDLFDKVRNA SSALAGLRKL TPSYWGMVVG HVGLAVTIVG 540
  541 VVMVSNYAME RNVRLDIGEQ VNLGGYDFTL TELGERRGPN FLADTATIEV AREGRIVTTL 600
  601 YPEKRLYIAR GQPMTDVALD PGLLRDLYVA MGEELDDGSW AMRLQVKPFV RWLWLGALLM 660
  661 ASGGVLAVAD RRYRRRRAAA ADRESMRPAR EVRA