YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238714335, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNMTEQNTP SAPVEETTTA VERHQQPAPE NRREKRTGPI LGAIAIALAI ALGAGLYYYG  60
   61 HQQAQLQDAA TLSLQEQLAE LKQSQLQEKQ QFESLLQQQA KALEAADRQQ TSLTRQLNEL 120
  121 QEKVATISGS DAKTWLLAQA DFLVKMAGRK LWSDQDVTTA ATLLKSADAS LADMNDPSLI 180
  181 DVRRALTEDI STLSAVSQVD FDGIILKLNQ LSNQVDNLRL ADNNIDDSPM DADSDELSSS 240
  241 LSEWRQNLTK SWHSFMSDFM TIRRRDSSAE PLLAPNQDVY LRENIRSRLL VAAQAVPRHQ 300
  301 DEVYKQSLET ISTWVRAYFD VNDPSTKAFL DELDSLSQQS ISMDVPDQLK SQPMLEKLMQ 360
  361 TRVRNLLAQA PAAAQGE

Type	Start	End	Confidence
Cytoplasmic	1	39	0.96
Transmembrane Helix	40	60	0.95
Non-Cytoplasmic	61	377	0.99