YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238716521, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSGRFIGVM SGTSLDGVDV VLAAIDERMV AQQASYCHPM PQQLKKEILG MCQGQSTTLS  60
   61 AVGKLDAQLG MLFAEAVLAL MSKEGLTAQD ITAIGCHGQT VWHEPLGEPA FTMQLGDNNR 120
  121 IAALTQVATV GDFRRRDMAY GGQGAPLVPA FHHALLAHAT ERRMVLNIGG IANLSMLLPD 180
  181 LPVRGFDTGP GNMLMDSWIW RNRSLPYDKD ATWALSGQVN QSLLELMYSD PYFAKPAPKS 240
  241 TGREYFNAGW LDRQLAKVAG VKPEDVQATL AELTALSIAE QVQLAGGCER LLVCGGGARN 300
  301 LLVMSRMSAL LPGTEVCVTD DFGVSGDDME ALAFAWLAFR TLSGKSGNLP SVTGASCETI 360
  361 LGAVYPVSSR

Type	Start	End	Confidence
Signal Peptide	1	23	0.58
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	370	0.98