YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|238798686, gi...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLAVFDRAA LMLICLFFLT RTRLFRQLLQ KEKHTPLELA AVTAIFSLFA IFGTYSGINV  60
   61 EGSLVNVRVI AVMSGGILFG PWVGIITGVI AGSHRYLIDI DGITSVPCLI TSIIAGLMSG 120
  121 YINLKVKKER QWSVGILAGM ICESLTMLLV VILAKPTALG IDIVSKIGIP MILGAVCIGL 180
  181 IVLLVQSVED EKEVIAARQA KLALDIANKT LPYFRNINGE SLRSVCEIIR DDIKADAVAI 240
  241 TDRQNILAYV GVGVETYDIG HEIISDITKE SIQRGKITIR NNDEAHRTPQ IHSLIIIPLW 300
  301 EKGEVTGSLK IYYCHAHKIT YSLKVMAVGL SQIISTQIEV SRIEHLREMA NKAEMRALQS 360
  361 KINPHFLFNA LNAISSSIRI NPDTARQLII NLSRYLRYSL ELNDEQIDIR KELHQIQDYI 420
  421 AIEQARFGSK LTVIYDIDDD IALKIPSLLI QPLVENAIVH GIQPYRGKGV VVIAVKDHGD 480
  481 QIKISVKDTG NGINPETIER VANNEMPGNK IGLLNVHHRV KLLYGEGLQI RRMEPGTEIS 540
  541 FYISKNGGKI HAEPSISAGV

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.72
Transmembrane Helix	6	25	0.85
Cytoplasmic	26	36	0.76
Transmembrane Helix	37	58	0.89
Non-Cytoplasmic	59	68	0.71
Transmembrane Helix	69	91	0.89
Cytoplasmic	92	101	0.63
Transmembrane Helix	102	122	0.91
Non-Cytoplasmic	123	131	0.71
Transmembrane Helix	132	154	0.91
Cytoplasmic	155	162	0.74
Transmembrane Helix	163	185	0.89
Non-Cytoplasmic	186	560	0.84