YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77962216
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQNEKIKKV SVVIPVYNEQ ESLPALIERT SAACKLLTQP YEIILVDDGS SDNSADILTA  60
   61 AANEPDSGII AVLLNRNYGQ HSAIMAGFNQ VSGDLVITLD ADLQNPPEEI PRLVAVAEEG 120
  121 YDVVGTVRAN RQDSLFRKTA SRMINMMIQR ATGKSMGDYG CMLRAYRRHI VEAMLHCHER 180
  181 STFIPILANT FARRTTEITV HHAEREFGDS KYSLMKLINL MYDLITCLTT TPLRLLSLVG 240
  241 SVIALSGFTL AVLLVVLRLV FGPEWAGGGV FTLFAVLFMF IGAQFVGMGL LGEYIGRIYN 300
  301 DVRARPRYFI QKVVGGEQTE NNQEIEK

Type	Start	End	Confidence
Cytoplasmic	1	234	0.82
Transmembrane Helix	235	261	0.82
Non-Cytoplasmic	262	268	0.66
Transmembrane Helix	269	292	0.85
Cytoplasmic	293	327	0.76