YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77962314
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTVPRQGTS VWMCLGLLTL LMIGFLLPVH SVWAANSDVM MARSADGENW SLPVQTLVLL  60
   61 TSLTFLPAIL LMMTGFTRII IVLGLLRNAL GTPSTPPNQV LLGLALFLTF YVMSPVFNQI 120
  121 YKEAWQPLSE DKISMETALE RGVQPLRTFM LEQTRETDLA LYTRMAKEEN FQSQDDVPLR 180
  181 ILLPAFVTSE LKTGFQIGFT VFIPFLIIDL VVASVLMALG MMMVPPATIS LPFKLMLFVL 240
  241 VDGWQLLMGS LAQSFFS

Type	Start	End	Confidence
Cytoplasmic	1	10	0.84
Transmembrane Helix	11	32	0.89
Non-Cytoplasmic	33	56	0.89
Transmembrane Helix	57	82	0.82
Cytoplasmic	83	97	0.78
Transmembrane Helix	98	117	0.84
Non-Cytoplasmic	118	200	0.87
Transmembrane Helix	201	222	0.88
Cytoplasmic	223	230	0.70
Transmembrane Helix	231	252	0.81
Non-Cytoplasmic	253	257	0.63